7UZC
Structure of the SARS-CoV-2 RBD in complex with the mouse antibody Fab fragment, M8a-34
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Spike protein S1 | polymer | 231 | 25994.3 | 2 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
2 | E, H | M8a-34 Fab heavy chain | polymer | 235 | 25507.5 | 2 | Mus musculus | ||
3 | F, L | M8a-34 Fab light chain | polymer | 218 | 23955.6 | 2 | Mus musculus (house mouse) | ||
4 | C | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G10756ZZ) | |||
5 | D | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
6 | water | water | 18.0 | 487 | Chemie (HOH) |
Sequence modifications
A, B: 328 - 533 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Met 309 | - | initiating methionine |
Gly 310 | - | expression tag |
Trp 311 | - | expression tag |
Ser 312 | - | expression tag |
Cys 313 | - | expression tag |
Ile 314 | - | expression tag |
Ile 315 | - | expression tag |
Leu 316 | - | expression tag |
Phe 317 | - | expression tag |
Leu 318 | - | expression tag |
Val 319 | - | expression tag |
Ala 320 | - | expression tag |
Thr 321 | - | expression tag |
Ala 322 | - | expression tag |
Thr 323 | - | expression tag |
Gly 324 | - | expression tag |
Val 325 | - | expression tag |
His 326 | - | expression tag |
Ser 327 | - | expression tag |
His 534 | - | expression tag |
His 535 | - | expression tag |
His 536 | - | expression tag |
His 537 | - | expression tag |
His 538 | - | expression tag |
His 539 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 150914.8 | |
Branched | Number of molecules | 2 |
Total formula weight | 1659.5 | |
All* | Total formula weight | 152574.3 |