7UQZ
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 60S ribosomal protein L2-A | polymer | 254 | 27463.6 | 1 | UniProt (P0CX45) Pfam (PF00181) Pfam (PF03947) | Saccharomyces cerevisiae BY4741 | L5,Large ribosomal subunit protein uL2-A,RP8,YL6 |
| 2 | B (1) | 25S rRNA | polymer | 3396 | 1097928.6 | 1 | GenBank (2211411569) | Saccharomyces cerevisiae BY4741 | |
| 3 | C (2) | 5.8S rRNA | polymer | 158 | 50682.9 | 1 | GenBank (1767169448) | Saccharomyces cerevisiae BY4741 | |
| 4 | D (3) | 5S rRNA | polymer | 121 | 38951.1 | 1 | GenBank (1039023754) | Saccharomyces cerevisiae BY4741 | |
| 5 | E (5) | rRNA-processing protein | polymer | 114 | 13731.2 | 1 | UniProt (A0A6A5PUZ0) Pfam (PF03879) UniProt (by SIFTS) (P53188) | Saccharomyces cerevisiae BY4741 | |
| 6 | F (6) | ITS2 rRNA | polymer | 74 | 23660.9 | 1 | Saccharomyces cerevisiae BY4741 | ||
| 7 | G (8) | 60S ribosomal protein L12-A | polymer | 165 | 17850.6 | 1 | UniProt (P0CX53) Pfam (PF03946) Pfam (PF00298) | Saccharomyces cerevisiae BY4741 | L15,Large ribosomal subunit protein uL11-A,YL23 |
| 8 | H (9) | Ribosome biogenesis protein ALB1 | polymer | 175 | 19322.0 | 1 | UniProt (A6ZQK9) Pfam (PF09135) UniProt (by SIFTS) (P47019) | Saccharomyces cerevisiae BY4741 | |
| 9 | I (B) | 60S ribosomal protein L3 | polymer | 386 | 43719.6 | 1 | UniProt (P14126) Pfam (PF00297) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1 |
| 10 | J (C) | 60S ribosomal protein L4-A | polymer | 362 | 39159.1 | 1 | UniProt (P10664) Pfam (PF00573) Pfam (PF14374) | Saccharomyces cerevisiae BY4741 | L2,Large ribosomal subunit protein uL4-A,RP2,YL2 |
| 11 | K (D) | 60S ribosomal protein L5 | polymer | 297 | 33764.8 | 1 | UniProt (P26321) Pfam (PF17144) Pfam (PF14204) | Saccharomyces cerevisiae BY4741 | L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3 |
| 12 | L (E) | 60S ribosomal protein L6-A | polymer | 176 | 20000.6 | 1 | UniProt (Q02326) Pfam (PF01159) | Saccharomyces cerevisiae BY4741 | L17,Large ribosomal subunit protein eL6-A,RP18,YL16 |
| 13 | M (F) | 60S ribosomal protein L7-A | polymer | 244 | 27686.3 | 1 | UniProt (P05737) Pfam (PF08079) Pfam (PF00327) | Saccharomyces cerevisiae BY4741 | L6,Large ribosomal subunit protein uL30-A,RP11,YL8 |
| 14 | N (G) | 60S ribosomal protein L8-A | polymer | 256 | 28175.8 | 1 | UniProt (P17076) Pfam (PF01248) | Saccharomyces cerevisiae BY4741 | L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5 |
| 15 | O (H) | 60S ribosomal protein L9-A | polymer | 191 | 21605.1 | 1 | UniProt (P05738) Pfam (PF00347) | Saccharomyces cerevisiae BY4741 | L8,Large ribosomal subunit protein uL6-A,RP24,YL11 |
| 16 | P (I) | Bud site selection protein 20 | polymer | 131 | 15115.4 | 1 | UniProt (Q08004) Pfam (PF12171) | Saccharomyces cerevisiae BY4741 | |
| 17 | Q (J) | 60S ribosomal protein L11-A | polymer | 171 | 19466.3 | 1 | UniProt (P0C0W9) Pfam (PF00281) Pfam (PF00673) | Saccharomyces cerevisiae BY4741 | L16,Large ribosomal subunit protein uL5-A,RP39,YL22 |
| 18 | R (K) | Proteasome-interacting protein CIC1 | polymer | 339 | 38564.2 | 1 | UniProt (P38779) Pfam (PF00687) | Saccharomyces cerevisiae BY4741 | Core interacting component 1 |
| 19 | S (L) | 60S ribosomal protein L13-A | polymer | 199 | 22604.2 | 1 | UniProt (Q12690) Pfam (PF01294) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL13-A |
| 20 | T (M) | 60S ribosomal protein L14-A | polymer | 138 | 15195.1 | 1 | UniProt (P36105) Pfam (PF00467) Pfam (PF01929) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL14-A |
| 21 | U (N) | 60S ribosomal protein L15-A | polymer | 203 | 24351.2 | 1 | UniProt (P05748) Pfam (PF00827) | Saccharomyces cerevisiae BY4741 | L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18 |
| 22 | V (O) | 60S ribosomal protein L16-A | polymer | 197 | 22029.0 | 1 | UniProt (P26784) Pfam (PF00572) | Saccharomyces cerevisiae BY4741 | L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15 |
| 23 | W (P) | 60S ribosomal protein L17-A | polymer | 183 | 20458.3 | 1 | UniProt (P05740) Pfam (PF00237) | Saccharomyces cerevisiae BY4741 | L20A,Large ribosomal subunit protein uL22-A,YL17 |
| 24 | X (Q) | 60S ribosomal protein L18-A | polymer | 186 | 20609.3 | 1 | UniProt (P0CX49) Pfam (PF17135) | Saccharomyces cerevisiae BY4741 | EM14S01-3B_G0025830.mRNA.1.CDS.1,HLJ1_G0009570.mRNA.1.CDS.1,HN1_G0036520.mRNA.1.CDS.1,SX2_G0009590.mRNA.1.CDS.1,SX2_G0031330.mRNA.1.CDS.1,XXYS1_4_G0011980.mRNA.1.CDS.1,XXYS1_4_G0028370.mRNA.1.CDS.1,Y55_G0009820.mRNA.1.CDS.1,Y55_G0036540.mRNA.1.CDS.1 |
| 25 | Y (R) | 60S ribosomal protein L19-A | polymer | 189 | 21762.3 | 1 | UniProt (P0CX82) Pfam (PF01280) | Saccharomyces cerevisiae BY4741 | L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14 |
| 26 | Z (S) | 60S ribosomal protein L20-A | polymer | 172 | 20478.9 | 1 | UniProt (P0CX23) Pfam (PF01775) | Saccharomyces cerevisiae BY4741 | L18a,Large ribosomal subunit protein eL20-A |
| 27 | AA (T) | 60S ribosomal protein L21-A | polymer | 160 | 18279.3 | 1 | UniProt (Q02753) Pfam (PF01157) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL21-A |
| 28 | BA (U) | 60S ribosomal protein L22-A | polymer | 121 | 13711.4 | 1 | UniProt (P05749) Pfam (PF01776) | Saccharomyces cerevisiae BY4741 | L1c,Large ribosomal subunit protein eL22-A,RP4,YL31 |
| 29 | CA (V) | 60S ribosomal protein L23-A | polymer | 137 | 14494.0 | 1 | UniProt (P0CX41) Pfam (PF00238) | Saccharomyces cerevisiae BY4741 | L17a,Large ribosomal subunit protein uL14-A,YL32 |
| 30 | DA (W) | Ribosome assembly factor MRT4 | polymer | 236 | 27098.0 | 1 | UniProt (P33201) Pfam (PF00466) Pfam (PF17777) | Saccharomyces cerevisiae BY4741 | mRNA turnover protein 4 |
| 31 | EA (X) | 60S ribosomal protein L25 | polymer | 142 | 15787.6 | 1 | UniProt (P04456) Pfam (PF03939) Pfam (PF00276) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein uL23,RP16L,YL25,YP42' |
| 32 | FA (Y) | 60S ribosomal protein L26-A | polymer | 127 | 14265.8 | 1 | UniProt (P05743) Pfam (PF16906) Pfam (PF00467) | Saccharomyces cerevisiae BY4741 | L33,Large ribosomal subunit protein uL24-A,YL33 |
| 33 | GA (Z) | 60S ribosomal protein L27-A | polymer | 136 | 15568.4 | 1 | UniProt (P0C2H6) Pfam (PF01777) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL27-A |
| 34 | HA (a) | 60S ribosomal protein L28 | polymer | 149 | 16761.7 | 1 | UniProt (P02406) Pfam (PF00828) | Saccharomyces cerevisiae BY4741 | L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24 |
| 35 | IA (b) | Nucleolar GTP-binding protein 1 | polymer | 647 | 74531.2 | 1 | UniProt (Q02892) Pfam (PF17835) Pfam (PF06858) Pfam (PF08155) | Saccharomyces cerevisiae BY4741 | |
| 36 | JA (c) | 60S ribosomal protein L30 | polymer | 105 | 11430.4 | 1 | UniProt (P14120) Pfam (PF01248) | Saccharomyces cerevisiae BY4741 | L32,Large ribosomal subunit protein eL30,RP73,YL38 |
| 37 | KA (d) | 60S ribosomal protein L31-A | polymer | 113 | 12980.2 | 1 | UniProt (P0C2H8) Pfam (PF01198) | Saccharomyces cerevisiae BY4741 | L34,Large ribosomal subunit protein eL31-A,YL28 |
| 38 | LA (e) | 60S ribosomal protein L32 | polymer | 130 | 14809.4 | 1 | UniProt (P38061) Pfam (PF01655) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL32 |
| 39 | MA (f) | 60S ribosomal protein L33-A | polymer | 107 | 12177.1 | 1 | UniProt (P05744) Pfam (PF01247) | Saccharomyces cerevisiae BY4741 | L37,Large ribosomal subunit protein eL33-A,RP47,YL37 |
| 40 | NA (g) | 60S ribosomal protein L34-A | polymer | 120 | 13544.0 | 1 | UniProt (P87262) Pfam (PF01199) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL34-A |
| 41 | OA (h) | 60S ribosomal protein L35-A | polymer | 120 | 13942.6 | 1 | UniProt (P0CX84) Pfam (PF00831) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein uL29-A |
| 42 | PA (i) | 60S ribosomal protein L36-A | polymer | 99 | 11020.1 | 1 | UniProt (P05745) Pfam (PF01158) | Saccharomyces cerevisiae BY4741 | L39,Large ribosomal subunit protein eL36-A,YL39 |
| 43 | QA (j) | 60S ribosomal protein L37-A | polymer | 87 | 9806.3 | 1 | UniProt (P49166) Pfam (PF01907) | Saccharomyces cerevisiae BY4741 | L43,Large ribosomal subunit protein eL37-A,YL35,YP55 |
| 44 | RA (k) | 60S ribosomal protein L38 | polymer | 78 | 8845.6 | 1 | UniProt (P49167) Pfam (PF01781) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL38 |
| 45 | SA (l) | 60S ribosomal protein L39 | polymer | 50 | 6227.4 | 1 | UniProt (P04650) Pfam (PF00832) | Saccharomyces cerevisiae BY4741 | L46,Large ribosomal subunit protein eL39,YL40 |
| 46 | TA (m) | Nucleolar GTP-binding protein 2 | polymer | 472 | 53997.8 | 1 | UniProt (P53742) Pfam (PF08153) Pfam (PF01926) | Saccharomyces cerevisiae BY4741 | |
| 47 | UA (n) | Pescadillo homolog | polymer | 605 | 69984.1 | 1 | UniProt (P53261) Pfam (PF06732) Pfam (PF16589) | Saccharomyces cerevisiae BY4741 | Nucleolar protein 7,Ribosomal RNA-processing protein 13 |
| 48 | VA (o) | Ribosome biogenesis protein 15 | polymer | 220 | 25499.2 | 1 | UniProt (P53927) Pfam (PF00076) | Saccharomyces cerevisiae BY4741 | Nucleolar protein 15 |
| 49 | WA (p) | 60S ribosomal protein L43-A | polymer | 92 | 10113.0 | 1 | UniProt (P0CX25) Pfam (PF01780) | Saccharomyces cerevisiae BY4741 | L37a,Large ribosomal subunit protein eL43-A,YL35 |
| 50 | XA (q) | Ribosome biogenesis protein NOP53 | polymer | 455 | 52667.8 | 1 | UniProt (Q12080) Pfam (PF07767) | Saccharomyces cerevisiae BY4741 | Nucleolar protein 53 |
| 51 | YA (r) | Ribosome biogenesis protein NSA2 | polymer | 261 | 29786.8 | 1 | UniProt (P40078) Pfam (PF01201) | Saccharomyces cerevisiae BY4741 | NOP7-associated protein 2 |
| 52 | ZA (s) | Nuclear GTP-binding protein NUG1 | polymer | 520 | 57798.7 | 1 | UniProt (P40010) Pfam (PF08701) Pfam (PF01926) | Saccharomyces cerevisiae BY4741 | Nuclear GTPase 1 |
| 53 | AB (t) | Ribosome biogenesis protein RLP7 | polymer | 321 | 36489.9 | 1 | UniProt (P40693) Pfam (PF00327) | Saccharomyces cerevisiae BY4741 | Ribosomal protein L7-like |
| 54 | BB (u) | Ribosome biogenesis protein RLP24 | polymer | 199 | 24027.7 | 1 | UniProt (Q07915) Pfam (PF01246) | Saccharomyces cerevisiae BY4741 | Ribosomal protein L24-like |
| 55 | CB (v) | Ribosome production factor 2 homolog | polymer | 344 | 39665.8 | 1 | UniProt (A0A6A5PVK5) Pfam (PF04427) UniProt (by SIFTS) (P36160) | Saccharomyces cerevisiae BY4741 | Ribosome biogenesis protein RPF2 homolog |
| 56 | DB (w) | Ribosome biogenesis regulatory protein | polymer | 202 | 22870.2 | 1 | UniProt (A0A6A5Q4U5) Pfam (PF04939) UniProt (by SIFTS) (Q08746) | Saccharomyces cerevisiae BY4741 | |
| 57 | EB (x) | RSA4 isoform 1 | polymer | 515 | 57106.8 | 1 | UniProt (A0A6A5Q1D2) Pfam (PF08154) Pfam (PF00400) UniProt (by SIFTS) (P25382) | Saccharomyces cerevisiae BY4741 | |
| 58 | FB (y) | Eukaryotic translation initiation factor 6 | polymer | 244 | 26389.5 | 1 | UniProt (Q12522) Pfam (PF01912) | Saccharomyces cerevisiae BY4741 | eIF-6 |
| 59 | GB (z) | UPF0642 protein YBL028C | polymer | 105 | 12304.2 | 1 | UniProt (P38202) Pfam (PF10338) | Saccharomyces cerevisiae BY4741 | |
| 60 | HB (4) | Probable metalloprotease ARX1 | polymer | 592 | 65159.1 | 1 | UniProt (Q03862) | Saccharomyces cerevisiae BY4741 | Associated with ribosomal export complex protein 1 |
| 61 | AC, AD, AE, BC, BD... (1, R, V, b, m) | MAGNESIUM ION | non-polymer | 24.3 | 81 | Chemie (MG) | |||
| 62 | HE, IE, JE (1) | 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL | non-polymer | 282.3 | 3 | Chemie (B3P) | |||
| 63 | KE, PE, QE, UE, VE (I, g, j, p, u) | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
| 64 | NE, RE (b, m) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 2 | Chemie (GDP) | |||
| 65 | TE (m) | POTASSIUM ION | non-polymer | 39.1 | 1 | Chemie (K) | |||
| 66 | AF, BF, CF, DF, EF... (C, E, F, N, O...) | water | water | 18.0 | 373 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 60 |
| Total formula weight | 2653477.1 | |
| Non-Polymers* | Number of molecules | 92 |
| Total formula weight | 4068.3 | |
| All* | Total formula weight | 2657545.4 |
