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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7UQZ

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)		60S ribosomal protein L2-Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)		Saccharomyces cerevisiae BY4741L5,Large ribosomal subunit protein uL2-A,RP8,YL6
2B
(1)		25S rRNApolymer33961097928.61GenBank (2211411569)Saccharomyces cerevisiae BY4741
3C
(2)		5.8S rRNApolymer15850682.91GenBank (1767169448)Saccharomyces cerevisiae BY4741
4D
(3)		5S rRNApolymer12138951.11GenBank (1039023754)Saccharomyces cerevisiae BY4741
5E
(5)		rRNA-processing proteinpolymer11413731.21UniProt (A0A6A5PUZ0)
Pfam (PF03879)
UniProt (by SIFTS) (P53188)		Saccharomyces cerevisiae BY4741
6F
(6)		ITS2 rRNApolymer7423660.91Saccharomyces cerevisiae BY4741
7G
(8)		60S ribosomal protein L12-Apolymer16517850.61UniProt (P0CX53)
Pfam (PF03946)
Pfam (PF00298)		Saccharomyces cerevisiae BY4741L15,Large ribosomal subunit protein uL11-A,YL23
8H
(9)		Ribosome biogenesis protein ALB1polymer17519322.01UniProt (A6ZQK9)
Pfam (PF09135)
UniProt (by SIFTS) (P47019)		Saccharomyces cerevisiae BY4741
9I
(B)		60S ribosomal protein L3polymer38643719.61UniProt (P14126)
Pfam (PF00297)		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
10J
(C)		60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)		Saccharomyces cerevisiae BY4741L2,Large ribosomal subunit protein uL4-A,RP2,YL2
11K
(D)		60S ribosomal protein L5polymer29733764.81UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)		Saccharomyces cerevisiae BY4741L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
12L
(E)		60S ribosomal protein L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)		Saccharomyces cerevisiae BY4741L17,Large ribosomal subunit protein eL6-A,RP18,YL16
13M
(F)		60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)		Saccharomyces cerevisiae BY4741L6,Large ribosomal subunit protein uL30-A,RP11,YL8
14N
(G)		60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)		Saccharomyces cerevisiae BY4741L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
15O
(H)		60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)		Saccharomyces cerevisiae BY4741L8,Large ribosomal subunit protein uL6-A,RP24,YL11
16P
(I)		Bud site selection protein 20polymer13115115.41UniProt (Q08004)
Pfam (PF12171)		Saccharomyces cerevisiae BY4741
17Q
(J)		60S ribosomal protein L11-Apolymer17119466.31UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)		Saccharomyces cerevisiae BY4741L16,Large ribosomal subunit protein uL5-A,RP39,YL22
18R
(K)		Proteasome-interacting protein CIC1polymer33938564.21UniProt (P38779)
Pfam (PF00687)		Saccharomyces cerevisiae BY4741Core interacting component 1
19S
(L)		60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL13-A
20T
(M)		60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL14-A
21U
(N)		60S ribosomal protein L15-Apolymer20324351.21UniProt (P05748)
Pfam (PF00827)		Saccharomyces cerevisiae BY4741L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
22V
(O)		60S ribosomal protein L16-Apolymer19722029.01UniProt (P26784)
Pfam (PF00572)		Saccharomyces cerevisiae BY4741L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
23W
(P)		60S ribosomal protein L17-Apolymer18320458.31UniProt (P05740)
Pfam (PF00237)		Saccharomyces cerevisiae BY4741L20A,Large ribosomal subunit protein uL22-A,YL17
24X
(Q)		60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)		Saccharomyces cerevisiae BY4741EM14S01-3B_G0025830.mRNA.1.CDS.1,HLJ1_G0009570.mRNA.1.CDS.1,HN1_G0036520.mRNA.1.CDS.1,SX2_G0009590.mRNA.1.CDS.1,SX2_G0031330.mRNA.1.CDS.1,XXYS1_4_G0011980.mRNA.1.CDS.1,XXYS1_4_G0028370.mRNA.1.CDS.1,Y55_G0009820.mRNA.1.CDS.1,Y55_G0036540.mRNA.1.CDS.1
25Y
(R)		60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
Pfam (PF25476)		Saccharomyces cerevisiae BY4741L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
26Z
(S)		60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)		Saccharomyces cerevisiae BY4741L18a,Large ribosomal subunit protein eL20-A
27AA
(T)		60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL21-A
28BA
(U)		60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)		Saccharomyces cerevisiae BY4741L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
29CA
(V)		60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)		Saccharomyces cerevisiae BY4741L17a,Large ribosomal subunit protein uL14-A,YL32
30DA
(W)		Ribosome assembly factor MRT4polymer23627098.01UniProt (P33201)
Pfam (PF00466)
Pfam (PF17777)		Saccharomyces cerevisiae BY4741mRNA turnover protein 4
31EA
(X)		60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
32FA
(Y)		60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)		Saccharomyces cerevisiae BY4741L33,Large ribosomal subunit protein uL24-A,YL33
33GA
(Z)		60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL27-A
34HA
(a)		60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)		Saccharomyces cerevisiae BY4741L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
35IA
(b)		Nucleolar GTP-binding protein 1polymer64774531.21UniProt (Q02892)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)		Saccharomyces cerevisiae BY4741
36JA
(c)		60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)		Saccharomyces cerevisiae BY4741L32,Large ribosomal subunit protein eL30,RP73,YL38
37KA
(d)		60S ribosomal protein L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)		Saccharomyces cerevisiae BY4741L34,Large ribosomal subunit protein eL31-A,YL28
38LA
(e)		60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL32
39MA
(f)		60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)		Saccharomyces cerevisiae BY4741L37,Large ribosomal subunit protein eL33-A,RP47,YL37
40NA
(g)		60S ribosomal protein L34-Apolymer12013544.01UniProt (P87262)
Pfam (PF01199)		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL34-A
41OA
(h)		60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein uL29-A
42PA
(i)		60S ribosomal protein L36-Apolymer9911020.11UniProt (P05745)
Pfam (PF01158)		Saccharomyces cerevisiae BY4741L39,Large ribosomal subunit protein eL36-A,YL39
43QA
(j)		60S ribosomal protein L37-Apolymer879806.31UniProt (P49166)
Pfam (PF01907)		Saccharomyces cerevisiae BY4741L43,Large ribosomal subunit protein eL37-A,YL35,YP55
44RA
(k)		60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL38
45SA
(l)		60S ribosomal protein L39polymer506227.41UniProt (P04650)
Pfam (PF00832)		Saccharomyces cerevisiae BY4741L46,Large ribosomal subunit protein eL39,YL40
46TA
(m)		Nucleolar GTP-binding protein 2polymer47253997.81UniProt (P53742)
Pfam (PF08153)
Pfam (PF01926)		Saccharomyces cerevisiae BY4741
47UA
(n)		Pescadillo homologpolymer60569984.11UniProt (P53261)
Pfam (PF06732)
Pfam (PF16589)		Saccharomyces cerevisiae BY4741Nucleolar protein 7,Ribosomal RNA-processing protein 13
48VA
(o)		Ribosome biogenesis protein 15polymer22025499.21UniProt (P53927)
Pfam (PF00076)		Saccharomyces cerevisiae BY4741Nucleolar protein 15
49WA
(p)		60S ribosomal protein L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)		Saccharomyces cerevisiae BY4741L37a,Large ribosomal subunit protein eL43-A,YL35
50XA
(q)		Ribosome biogenesis protein NOP53polymer45552667.81UniProt (Q12080)
Pfam (PF07767)		Saccharomyces cerevisiae BY4741Nucleolar protein 53
51YA
(r)		Ribosome biogenesis protein NSA2polymer26129786.81UniProt (P40078)
Pfam (PF01201)		Saccharomyces cerevisiae BY4741NOP7-associated protein 2
52ZA
(s)		Nuclear GTP-binding protein NUG1polymer52057798.71UniProt (P40010)
Pfam (PF08701)
Pfam (PF01926)		Saccharomyces cerevisiae BY4741Nuclear GTPase 1
53AB
(t)		Ribosome biogenesis protein RLP7polymer32136489.91UniProt (P40693)
Pfam (PF00327)		Saccharomyces cerevisiae BY4741Ribosomal protein L7-like
54BB
(u)		Ribosome biogenesis protein RLP24polymer19924027.71UniProt (Q07915)
Pfam (PF01246)		Saccharomyces cerevisiae BY4741Ribosomal protein L24-like
55CB
(v)		Ribosome production factor 2 homologpolymer34439665.81UniProt (A0A6A5PVK5)
Pfam (PF04427)
UniProt (by SIFTS) (P36160)		Saccharomyces cerevisiae BY4741Ribosome biogenesis protein RPF2 homolog
56DB
(w)		Ribosome biogenesis regulatory proteinpolymer20222870.21UniProt (A0A6A5Q4U5)
Pfam (PF04939)
UniProt (by SIFTS) (Q08746)		Saccharomyces cerevisiae BY4741
57EB
(x)		RSA4 isoform 1polymer51557106.81UniProt (A0A6A5Q1D2)
Pfam (PF08154)
Pfam (PF00400)
UniProt (by SIFTS) (P25382)		Saccharomyces cerevisiae BY4741
58FB
(y)		Eukaryotic translation initiation factor 6polymer24426389.51UniProt (Q12522)
Pfam (PF01912)		Saccharomyces cerevisiae BY4741eIF-6
59GB
(z)		UPF0642 protein YBL028Cpolymer10512304.21UniProt (P38202)
Pfam (PF10338)		Saccharomyces cerevisiae BY4741
60HB
(4)		Probable metalloprotease ARX1polymer59265159.11UniProt (Q03862)Saccharomyces cerevisiae BY4741Associated with ribosomal export complex protein 1
61AC, AD, AE, BC, BD...
(1, R, V, b, m)		MAGNESIUM IONnon-polymer24.381Chemie (MG)
PubChem (888)
62HE, IE, JE
(1)		2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOLnon-polymer282.33Chemie (B3P)
PubChem (125132)
63KE, PE, QE, UE, VE
(I, g, j, p, u)		ZINC IONnon-polymer65.45Chemie (ZN)
64NE, RE
(b, m)		GUANOSINE-5'-DIPHOSPHATEnon-polymer443.22Chemie (GDP)
PubChem (136073927)
PubChem (135398619)
PubChem (135402030)
PubChem (135431654)
PubChem (135566337)
PubChem (135760556)
PubChem (136026707)
PubChem (136053418)
PubChem (136663964)
PubChem (136664748)
PubChem (136759848)
PubChem (136759849)
PubChem (136759850)
PubChem (136836636)
PubChem (136847074)
PubChem (172898537)
65TE
(m)		POTASSIUM IONnon-polymer39.11Chemie (K)
PubChem (813)
66AF, BF, CF, DF, EF...
(C, E, F, N, O...)		waterwater18.0373Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains60
Total formula weight2653477.1
Non-Polymers*Number of molecules92
Total formula weight4068.3
All*Total formula weight2657545.4
*Water molecules are not included.

251422

PDB entries from 2026-04-01

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