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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7UQB

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A60S ribosomal protein L2-Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Saccharomyces cerevisiae BY4741L5,Large ribosomal subunit protein uL2-A,RP8,YL6
2125S rRNApolymer33961097942.61GenBank (2211411569)Saccharomyces cerevisiae BY4741
325.8S rRNApolymer15850682.91GenBank (1767169448)Saccharomyces cerevisiae BY4741
435S rRNApolymer12138951.11GenBank (1039023754)Saccharomyces cerevisiae BY4741
55rRNA-processing proteinpolymer12014460.11UniProt (A0A6A5PUZ0)
Pfam (PF03879)
UniProt (by SIFTS) (P53188)
In PDB		Saccharomyces cerevisiae BY4741
66ITS2 rRNApolymer7423660.91Saccharomyces cerevisiae BY4741
7860S ribosomal protein L12-Apolymer16517850.61UniProt (P0CX53)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Saccharomyces cerevisiae BY4741L15,Large ribosomal subunit protein uL11-A,YL23
89Ribosome biogenesis protein ALB1polymer17519322.01UniProt (A6ZQK9)
Pfam (PF09135)
UniProt (by SIFTS) (P47019)
In PDB		Saccharomyces cerevisiae BY4741
9B60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
10C60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Saccharomyces cerevisiae BY4741L2,Large ribosomal subunit protein uL4-A,RP2,YL2
11D60S ribosomal protein L5polymer29733764.81UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Saccharomyces cerevisiae BY4741L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
12E60S ribosomal protein L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)
In PDB		Saccharomyces cerevisiae BY4741L17,Large ribosomal subunit protein eL6-A,RP18,YL16
13F60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae BY4741L6,Large ribosomal subunit protein uL30-A,RP11,YL8
14G60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae BY4741L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
15H60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
In PDB		Saccharomyces cerevisiae BY4741L8,Large ribosomal subunit protein uL6-A,RP24,YL11
16IBud site selection protein 20polymer16618547.01UniProt (Q08004)
Pfam (PF12171)
In PDB		Saccharomyces cerevisiae BY4741
17J60S ribosomal protein L11-Apolymer17419755.71UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Saccharomyces cerevisiae BY4741L16,Large ribosomal subunit protein uL5-A,RP39,YL22
18KProteasome-interacting protein CIC1polymer37642596.71UniProt (P38779)
Pfam (PF00687)
In PDB		Saccharomyces cerevisiae BY4741Core interacting component 1
19L60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL13-A
20M60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL14-A
21N60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
In PDB		Saccharomyces cerevisiae BY4741L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
22O60S ribosomal protein L16-Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
In PDB		Saccharomyces cerevisiae BY4741L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
23P60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
In PDB		Saccharomyces cerevisiae BY4741L20A,Large ribosomal subunit protein uL22-A,YL17
24Q60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
In PDB		Saccharomyces cerevisiae BY4741EM14S01-3B_G0025830.mRNA.1.CDS.1,HLJ1_G0009570.mRNA.1.CDS.1,HN1_G0036520.mRNA.1.CDS.1,SX2_G0009590.mRNA.1.CDS.1,SX2_G0031330.mRNA.1.CDS.1,XXYS1_4_G0011980.mRNA.1.CDS.1,XXYS1_4_G0028370.mRNA.1.CDS.1,Y55_G0009820.mRNA.1.CDS.1,Y55_G0036540.mRNA.1.CDS.1
25R60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
In PDB		Saccharomyces cerevisiae BY4741L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
26S60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
In PDB		Saccharomyces cerevisiae BY4741L18a,Large ribosomal subunit protein eL20-A
27T60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL21-A
28U60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)
In PDB		Saccharomyces cerevisiae BY4741L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
29V60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
In PDB		Saccharomyces cerevisiae BY4741L17a,Large ribosomal subunit protein uL14-A,YL32
30WRibosome assembly factor MRT4polymer23627098.01UniProt (P33201)
Pfam (PF00466)
Pfam (PF17777)
In PDB		Saccharomyces cerevisiae BY4741mRNA turnover protein 4
31X60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
32Y60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiae BY4741L33,Large ribosomal subunit protein uL24-A,YL33
33Z60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL27-A
34a60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)
In PDB		Saccharomyces cerevisiae BY4741L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
35bNucleolar GTP-binding protein 1polymer64774531.21UniProt (Q02892)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
In PDB		Saccharomyces cerevisiae BY4741
36c60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae BY4741L32,Large ribosomal subunit protein eL30,RP73,YL38
37d60S ribosomal protein L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)
In PDB		Saccharomyces cerevisiae BY4741L34,Large ribosomal subunit protein eL31-A,YL28
38e60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL32
39f60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
In PDB		Saccharomyces cerevisiae BY4741L37,Large ribosomal subunit protein eL33-A,RP47,YL37
40g60S ribosomal protein L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL34-A
41h60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein uL29-A
42i60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
In PDB		Saccharomyces cerevisiae BY4741L39,Large ribosomal subunit protein eL36-A,YL39
43j60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
In PDB		Saccharomyces cerevisiae BY4741L43,Large ribosomal subunit protein eL37-A,YL35,YP55
44k60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)
In PDB		Saccharomyces cerevisiae BY4741Large ribosomal subunit protein eL38
45l60S ribosomal protein L39polymer516358.61UniProt (P04650)
Pfam (PF00832)
In PDB		Saccharomyces cerevisiae BY4741L46,Large ribosomal subunit protein eL39,YL40
46mNucleolar GTP-binding protein 2polymer48655585.61UniProt (P53742)
Pfam (PF08153)
Pfam (PF01926)
In PDB		Saccharomyces cerevisiae BY4741
47nPescadillo homologpolymer60569984.11UniProt (P53261)
Pfam (PF06732)
Pfam (PF16589)
In PDB		Saccharomyces cerevisiae BY4741Nucleolar protein 7,Ribosomal RNA-processing protein 13
48oRibosome biogenesis protein 15polymer22025499.21UniProt (P53927)
Pfam (PF00076)
In PDB		Saccharomyces cerevisiae BY4741Nucleolar protein 15
49p60S ribosomal protein L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)
In PDB		Saccharomyces cerevisiae BY4741L37a,Large ribosomal subunit protein eL43-A,YL35
50qRibosome biogenesis protein NOP53polymer45552667.81UniProt (Q12080)
Pfam (PF07767)
In PDB		Saccharomyces cerevisiae BY4741Nucleolar protein 53
51rRibosome biogenesis protein NSA2polymer26129786.81UniProt (P40078)
Pfam (PF01201)
In PDB		Saccharomyces cerevisiae BY4741NOP7-associated protein 2
52sNuclear GTP-binding protein NUG1polymer779226.01UniProt (P40010)
Pfam (PF08701)
In PDB		Saccharomyces cerevisiae BY4741Nuclear GTPase 1
53tRibosome biogenesis protein RLP7polymer32236621.11UniProt (P40693)
Pfam (PF00327)
In PDB		Saccharomyces cerevisiae BY4741Ribosomal protein L7-like
54uRibosome biogenesis protein RLP24polymer19924027.71UniProt (Q07915)
Pfam (PF01246)
In PDB		Saccharomyces cerevisiae BY4741Ribosomal protein L24-like
55vRibosome production factor 2 homologpolymer34439665.81UniProt (A0A6A5PVK5)
Pfam (PF04427)
UniProt (by SIFTS) (P36160)
In PDB		Saccharomyces cerevisiae BY4741Ribosome biogenesis protein RPF2 homolog
56wRibosome biogenesis regulatory proteinpolymer20122817.21UniProt (A0A6A5Q4U5)
Pfam (PF04939)
UniProt (by SIFTS) (Q08746)
In PDB		Saccharomyces cerevisiae BY4741
57xRSA4 isoform 1polymer51456975.61UniProt (A0A6A5Q1D2)
Pfam (PF08154)
Pfam (PF00400)
UniProt (by SIFTS) (P25382)
In PDB		Saccharomyces cerevisiae BY4741
58yEukaryotic translation initiation factor 6polymer24526476.61UniProt (Q12522)
Pfam (PF01912)
In PDB		Saccharomyces cerevisiae BY4741eIF-6
59zUPF0642 protein YBL028Cpolymer10612435.41UniProt (P38202)
Pfam (PF10338)
In PDB		Saccharomyces cerevisiae BY4741
604Probable metalloprotease ARX1polymer59365290.31UniProt (Q03862)
In PDB		Saccharomyces cerevisiae BY4741Associated with ribosomal export complex protein 1
6112-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOLnon-polymer282.33Chemie (B3P)
621, 2, R, V, b...MAGNESIUM IONnon-polymer24.381Chemie (MG)
63I, g, j, p, uZINC IONnon-polymer65.45Chemie (ZN)
64b, mGUANOSINE-5'-DIPHOSPHATEnon-polymer443.22Chemie (GDP)
65mTETRAFLUOROALUMINATE IONnon-polymer103.01Chemie (ALF)
66mPOTASSIUM IONnon-polymer39.11Chemie (K)
67waterwater18.0374Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains60
Total formula weight2616359.6
Non-Polymers*Number of molecules93
Total formula weight4171.2
All*Total formula weight2620530.8
*Water molecules are not included.

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PDB entries from 2024-07-24

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