7UMT

Structure of the VP5*/VP8* assembly from the human rotavirus strain CDC-9 - Reversed conformation

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C (1, 2, 3)	Outer capsid protein VP5*	polymer	529	59605.3	3	UniProt (X4YMN0)	Rotavirus
2	D, E, F, G, H... (A, B, C, D, E...)	Intermediate capsid protein VP6	polymer	397	44995.0	18	UniProt (A0A223GHC7)	Rotavirus
3	AA, BA, CA, DA, EA... (a, b, c, d, e...)	Outer capsid glycoprotein VP7	polymer	326	37435.9	18	UniProt (B1NP55)	Rotavirus
4	NA (S)	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		586.5	1	In PDB GlyTouCan (G15407YE)
5	AE, BB, CB, DC, DD... (p, c, h, l, d...)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	35	Chemie (NAG)
6	AB, AC, AD, BC, BD... (c, g, k, l, p...)	CALCIUM ION	non-polymer		40.1	72	Chemie (CA)

Sequence modifications

1, 2, 3: 247 - 775 (UniProt: X4YMN0)

PDB	External Database	Details
Asp 250	Asn 250	conflict
Phe 331	Ser 331	conflict
Ile 364	Met 364	conflict
Arg 378	Lys 378	conflict
His 385	Asp 385	conflict
Leu 388	Ile 388	conflict
Asn 499	Asp 499	conflict
Asn 605	Ser 605	conflict

A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R: 1 - 397 (UniProt: A0A223GHC7)

PDB	External Database	Details
Val 281	Ile 281	conflict

a, b, c, d, e, f, g, h, i, j, k, l, m, n, o, p, q, r: 1 - 326 (UniProt: B1NP55)

PDB	External Database	Details
Ile 108	Thr 108	conflict
Ser 147	Asn 147	conflict

Contents of the asymmetric unit

Polymers	Number of chains	39
	Total formula weight	1662571.9
Branched	Number of molecules	1
	Total formula weight	586.5
Non-Polymers*	Number of molecules	107
	Total formula weight	10627.9
All*	Total formula weight	1673786.4

*Water molecules are not included.