7UGQ
Cryo-EM structure of BG24 Fabs with an inferred germline CDRL1 and 10-1074 Fabs in complex with HIV-1 Env 6405-SOSIP.664
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Envelope glycoprotein gp120 | polymer | 447 | 50007.8 | 3 | UniProt (D7S1H2) | Human immunodeficiency virus 1 | SU,Glycoprotein 120,gp120 |
| 2 | D, E, F (D, E, F) | Envelope glycoprotein gp41 | polymer | 129 | 14676.7 | 3 | Human immunodeficiency virus 1 | ||
| 3 | G, H, I (G, H, I) | BG24 with an inferred germline CDRL1 Fab heavy chain | polymer | 125 | 13758.4 | 3 | Homo sapiens | ||
| 4 | J, K, L (J, K, L) | BG24 with an inferred germline CDRL1 Fab light chain | polymer | 105 | 11177.2 | 3 | Homo sapiens | ||
| 5 | M, N, O (M, N, O) | 10-1074 Fab heavy chain | polymer | 133 | 14791.4 | 3 | Homo sapiens | ||
| 6 | P, Q, R (P, Q, R) | 10-1074 Fab light chain | polymer | 107 | 11701.0 | 3 | Homo sapiens | ||
| 7 | AB, CA, EA, HA, OA... (0, c, e, h, o...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 9 | In PDB GlyTouCan (G15407YE) | |||
| 8 | AA, BA, FA, GA, JA... (a, b, f, g, j...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 21 | In PDB GlyTouCan (G42666HT) | |||
| 9 | IA, UA, W (i, u, W) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G22768VO) | |||
| 10 | BB, DA (1, d) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1559.4 | 2 | In PDB GlyTouCan (G68668TB) | |||
| 11 | PA (p) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1397.2 | 1 | In PDB GlyTouCan (G83582BK) | |||
| 12 | CB, DB, EB, FB, GB... (A, B, C, D, E...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 24 | Chemie (NAG) |
Sequence modifications
A, B, C: 33 - 506 (UniProt: D7S1H2)
| PDB | External Database | Details |
|---|---|---|
| Asn 33 | Asp 32 | conflict |
| - | Glu 61 | deletion |
| - | Thr 62 | deletion |
| - | Glu 63 | deletion |
| - | Arg 138 | deletion |
| - | Gly 139 | deletion |
| - | Ala 140 | deletion |
| - | Ser 141 | deletion |
| - | Asn 142 | deletion |
| - | Ser 143 | deletion |
| - | Thr 144 | deletion |
| - | Gly 145 | deletion |
| - | Thr 146 | deletion |
| - | Asn 147 | deletion |
| - | Asn 148 | deletion |
| - | Gly 149 | deletion |
| - | Thr 150 | deletion |
| - | Ile 151 | deletion |
| - | Ser 152 | deletion |
| - | Ser 153 | deletion |
| - | Thr 154 | deletion |
| - | Gly 312 | deletion |
| - | Pro 313 | deletion |
| - | Gly 314 | deletion |
| - | Gln 315 | deletion |
| - | Ala 316 | deletion |
| - | Ile 317 | deletion |
| - | Trp 318 | deletion |
| Val 496 | Ile 495 | conflict |
| Arg 500 | Lys 499 | conflict |
| Cys 501 | Ala 500 | conflict |
| Lys 502 | Arg 501 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 18 |
| Total formula weight | 348337.6 | |
| Branched | Number of molecules | 36 |
| Total formula weight | 21439.8 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 5309.0 | |
| All* | Total formula weight | 375086.4 |
