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7U0D

Local refinement of cryo-EM structure of the interface of the Omicron RBD in complex with antibodies B-182.1 and A19-46.1

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(B)
Surface glycoproteinpolymer19622297.21UniProt (A0A7U3CI26)
Pfam (PF09408)
UniProt (by SIFTS) (P0DTC2)
Severe acute respiratory syndrome coronavirus 2
2B
(M)
Heavy chain of SARS-CoV-2 antibody A19-46.1polymer23124869.91Homo sapiens
3C
(N)
Light chain of SARS-CoV-2 antibody A19-46.1polymer21622760.31Homo sapiens
4D
(O)
Heavy chain of SARS-CoV-2 antibody B1-182.1polymer22824285.31Homo sapiens
5E
(P)
Light chain of SARS-CoV-2 antibody B1-182.1polymer21523536.01Homo sapiens
6F
(B)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.21Chemie (NAG)
Sequence modifications
B: 331 - 526 (UniProt: A0A7U3CI26)
PDBExternal DatabaseDetails
Asp 339Gly 16variant
Leu 371Ser 48variant
Pro 373Ser 50variant
Phe 375Ser 52variant
Lys 440Asn 117variant
Ser 446Gly 123variant
Asn 477Ser 154variant
Lys 478Thr 155variant
Ala 484Lys 161variant
Arg 493Gln 170variant
Ser 496Gly 173variant
Arg 498Gln 175variant
His 505Tyr 182variant
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains5
Total formula weight117748.7
Non-Polymers*Number of molecules1
Total formula weight221.2
All*Total formula weight117969.9
*Water molecules are not included.

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PDB entries from 2025-07-09

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