7TY0
Nipah Virus attachment (G) glycoprotein ectodomain in complex with nAH1.3 neutralizing antibody Fab fragment (local refinement of the stalk region)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, G, H (A, B, D, C) | Glycoprotein G | polymer | 539 | 60358.5 | 4 | UniProt (Q9IH62) Pfam (PF00423) | Nipah henipavirus | |
| 2 | C, D (J, K) | Igh protein | polymer | 458 | 50643.9 | 2 | UniProt (I6L985) Pfam (PF07686) Pfam (PF07654) | Mus sp. | |
| 3 | E, F (N, O) | nAH Fab light chain | polymer | 218 | 23947.5 | 2 | Mus sp. | ||
| 4 | I, J, K, L, O... (E, F, G, H, M...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
| 5 | M (I) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) | |||
| 6 | N (L) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 7 | Q, R, S, T, U... (D, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 6 | Chemie (NAG) |
Sequence modifications
A, B, D, C: 70 - 601 (UniProt: Q9IH62)
J, K: 1 - 443 (UniProt: I6L985)
| PDB | External Database | Details |
|---|---|---|
| His 64 | - | expression tag |
| His 65 | - | expression tag |
| His 66 | - | expression tag |
| His 67 | - | expression tag |
| His 68 | - | expression tag |
| His 69 | - | expression tag |
| Tyr 602 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Lys 3 | Asn 22 | conflict |
| Glu 5 | Val 24 | conflict |
| Met 18 | Leu 37 | conflict |
| Lys 19 | Arg 38 | conflict |
| Val 23 | Ala 42 | conflict |
| Ser 28 | Thr 47 | conflict |
| Ser 30 | Thr 49 | conflict |
| Tyr 31 | Asp 50 | conflict |
| Trp 33 | Tyr 52 | conflict |
| Asn 35 | Ser 54 | conflict |
| Ser 40 | Pro 59 | conflict |
| Glu 42 | Gly 61 | conflict |
| Gly 44 | Ala 63 | conflict |
| Val 48 | Leu 67 | conflict |
| Ala 49 | Gly 68 | conflict |
| Glu 50 | Phe 69 | conflict |
| Leu 53 | Asn 72 | conflict |
| Ser 55 | Ala 74 | conflict |
| Asn 57 | Gly 76 | conflict |
| Gly 59 | Thr 78 | conflict |
| His 61 | Glu 80 | conflict |
| Ala 63 | Ser 82 | conflict |
| Glu 64 | Ala 83 | conflict |
| Asp 76 | Asn 95 | conflict |
| Lys 78 | Gln 97 | conflict |
| Ser 80 | Ile 99 | conflict |
| Val 81 | Leu 100 | conflict |
| Asn 87 | Ala 106 | conflict |
| Pro 90 | Ala 109 | conflict |
| Thr 93 | Ser 112 | conflict |
| Gly 94 | Ala 113 | conflict |
| Ile 95 | Thr 114 | conflict |
| Thr 99 | Ala 118 | conflict |
| - | Asp 120 | deletion |
| - | Arg 121 | deletion |
| - | Arg 122 | deletion |
| - | Ser 123 | deletion |
| - | Ser 124 | deletion |
| - | Tyr 125 | deletion |
| - | Tyr 126 | deletion |
| Val 101 | Tyr 127 | conflict |
| Ile 102 | Ser 128 | conflict |
| Thr 103 | Gly 129 | conflict |
| Val 105 | Ser 131 | conflict |
| Glu 197 | Gln 223 | conflict |
| Gln 286 | Lys 312 | conflict |
| Gly 444 | - | expression tag |
| Gly 445 | - | expression tag |
| Ser 446 | - | expression tag |
| Gly 447 | - | expression tag |
| Gly 448 | - | expression tag |
| Gly 449 | - | expression tag |
| Ser 450 | - | expression tag |
| Trp 451 | - | expression tag |
| Ser 452 | - | expression tag |
| His 453 | - | expression tag |
| Pro 454 | - | expression tag |
| Gln 455 | - | expression tag |
| Phe 456 | - | expression tag |
| Glu 457 | - | expression tag |
| Lys 458 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 390617.0 | |
| Branched | Number of molecules | 8 |
| Total formula weight | 3703.5 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 1327.2 | |
| All* | Total formula weight | 395647.7 |
