Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7TUT

Structure of the rabbit 80S ribosome stalled on a 4-TMD Rhodopsin intermediate in complex with the multipass translocon

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AuL2polymer25728088.91UniProt (G1TT27)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Oryctolagus cuniculus (rabbit)
2CuL4polymer41346388.91UniProt (G1SVW5)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Oryctolagus cuniculus (rabbit)
3DuL18polymer29734481.81UniProt (G1SYJ6)
UniProt (by SIFTS) (P19949)
In PDB		Oryctolagus cuniculus (rabbit)
4EeL6polymer29133028.31UniProt (G1SKF7)
Pfam (PF03868)
Pfam (PF01159)
In PDB		Oryctolagus cuniculus (rabbit)
5FuL30polymer24729201.81UniProt (G1TUB1)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Oryctolagus cuniculus (rabbit)
6GeL8polymer31936221.51UniProt (G1STW0)
Pfam (PF01248)
In PDB		Oryctolagus cuniculus (rabbit)
7HuL6polymer19221871.41UniProt (G1SWI6)
Pfam (PF00347)
In PDB		Oryctolagus cuniculus (rabbit)
8IuL16polymer21424643.11UniProt (B7NZQ2)
Pfam (PF00252)
In PDB		Oryctolagus cuniculus (rabbit)
9JuL5polymer17820288.51UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Oryctolagus cuniculus (rabbit)
10LeL13polymer21124331.71UniProt (G1TPV0)
In PDB		Oryctolagus cuniculus (rabbit)
11MeL14polymer21823870.51UniProt (G1SZ12)
Pfam (PF01929)
In PDB		Oryctolagus cuniculus (rabbit)
12NeL15polymer20424193.31UniProt (G1T0C1)
Pfam (PF00827)
In PDB		Oryctolagus cuniculus (rabbit)
13OuL13polymer20323533.31Oryctolagus cuniculus (rabbit)
14PuL22polymer18421444.21UniProt (G1TVT6)
Pfam (PF00237)
UniProt (by SIFTS) (G1SCJ6)
In PDB		Oryctolagus cuniculus (rabbit)
15QeL18polymer18821653.61Oryctolagus cuniculus (rabbit)
16ReL19polymer19623535.31UniProt (G1TJR3)
Pfam (PF01280)
In PDB		Oryctolagus cuniculus (rabbit)
17SeL20polymer17620827.61Oryctolagus cuniculus (rabbit)
18TeL21polymer16018610.01UniProt (G1SHQ2)
Pfam (PF01157)
In PDB		Oryctolagus cuniculus (rabbit)
19UeL22polymer12814813.01UniProt (G1TSG1)
Pfam (PF01776)
In PDB		Oryctolagus cuniculus (rabbit)
20VuL14polymer14014892.51UniProt (G1T6D1)
Pfam (PF00238)
In PDB		Oryctolagus cuniculus (rabbit)
21WeL24polymer15717825.11UniProt (G1SE28)
Pfam (PF01246)
In PDB		Oryctolagus cuniculus (rabbit)
22XeL23polymer15617768.21UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Oryctolagus cuniculus (rabbit)
23YuL24polymer14517303.41UniProt (G1SQH0)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Oryctolagus cuniculus (rabbit)
24ZeL27polymer13615835.81UniProt (G1TXF6)
Pfam (PF00467)
Pfam (PF01777)
In PDB		Oryctolagus cuniculus (rabbit)
25auL15polymer14816620.61UniProt (G1SNY0)
Pfam (PF00828)
In PDB		Oryctolagus cuniculus (rabbit)
26beL29polymer22624931.61UniProt (G1SGR6)
Pfam (PF01779)
In PDB		Oryctolagus cuniculus (rabbit)
27ceL30polymer11512807.11UniProt (G1TDL2)
Pfam (PF01248)
In PDB		Oryctolagus cuniculus (rabbit)
28deL31polymer12514494.91UniProt (G1SHG0)
Pfam (PF01198)
In PDB		Oryctolagus cuniculus (rabbit)
29eeL32polymer13515898.91UniProt (G1U437)
Pfam (PF01655)
UniProt (by SIFTS) (G1TUN8)
In PDB		Oryctolagus cuniculus (rabbit)
30feL33polymer11012580.81UniProt (G1SF08)
Pfam (PF01247)
In PDB		Oryctolagus cuniculus (rabbit)
31geL34polymer11613196.91UniProt (G1U945)
Pfam (PF01199)
UniProt (by SIFTS) (G1TXG5)
In PDB		Oryctolagus cuniculus (rabbit)
32heL35polymer12314566.61UniProt (G1SIT5)
Pfam (PF00831)
In PDB		Oryctolagus cuniculus (rabbit)
33ieL36polymer10512263.81UniProt (G1TTQ5)
Pfam (PF01158)
In PDB		Oryctolagus cuniculus (rabbit)
34jeL37polymer9711111.01UniProt (U3KPD5)
Pfam (PF01907)
In PDB		Oryctolagus cuniculus (rabbit)
35keL38polymer708238.91UniProt (G1U001)
Pfam (PF01781)
In PDB		Oryctolagus cuniculus (rabbit)
36leL39polymer516455.81UniProt (G1TTN1)
Pfam (PF00832)
In PDB		Oryctolagus cuniculus (rabbit)
37meL40polymer10211699.81UniProt (A0A2K5PSA0)
Pfam (PF00240)
Pfam (PF01020)
In PDB		Oryctolagus cuniculus (rabbit)Ubiquitin-60S ribosomal protein L40
38neL41polymer253473.51UniProt (A0A087WNH4)
Pfam (PF05162)
In PDB		Oryctolagus cuniculus (rabbit)60s ribosomal protein l41
39oeL42polymer10612477.01UniProt (G1U344)
Pfam (PF00935)
UniProt (by SIFTS) (G1T040)
In PDB		Oryctolagus cuniculus (rabbit)
40peL43polymer9210299.41UniProt (G1SY53)
Pfam (PF01780)
In PDB		Oryctolagus cuniculus (rabbit)
41qP-site tRNApolymer7724632.61Oryctolagus cuniculus (rabbit)
42reL28polymer13715783.61UniProt (G1U7L1)
Pfam (PF01778)
In PDB		Oryctolagus cuniculus (rabbit)
43u5S ribosomal RNApolymer12038691.91GenBank (X06789.1)Oryctolagus cuniculus (rabbit)
44v5.8S ribosomal RNApolymer15650143.61Oryctolagus cuniculus (rabbit)
45wuL3polymer40346108.01UniProt (G1TL06)
Pfam (PF00297)
In PDB		Oryctolagus cuniculus (rabbit)
46BNascent chainpolymer27328623.01Oryctolagus cuniculus (rabbit)
471Protein transport protein Sec61 subunit alpha isoform 1polymer47652279.41UniProt (P38377)
Pfam (PF10559)
Pfam (PF00344)
In PDB		Canis lupus (gray wolf)Sec61 alpha-1
482Protein transport protein Sec61 subunit betapolymer969987.51UniProt (P60467)
Pfam (PF03911)
In PDB		Canis lupus (gray wolf)
493Protein transport protein Sec61 gammapolymer687752.31Canis lupus (gray wolf)
504Coiled-coil domain containing 47polymer48355803.51UniProt (A0A8C0RJF2)
Pfam (PF07946)
In PDB		Canis lupus (gray wolf)
515PAT complex subunit Asterixpolymer10612077.11UniProt (A0A8C0TSD6)
Pfam (PF03669)
In PDB		Canis lupus (gray wolf)
527Nicalinpolymer56363172.11UniProt (A0A8C0S144)
Pfam (PF04389)
In PDB		Canis lupus (gray wolf)
536Transmembrane protein 147polymer22425309.91UniProt (A0A8C0RUW0)
Pfam (PF09767)
In PDB		Canis lupus (gray wolf)
548Calcium load-activated calcium channelpolymer18821205.01Canis lupus (gray wolf)
55K28S ribosomal RNApolymer35431148115.41Oryctolagus cuniculus (rabbit)
569Obligate partner of TMCO1 insertasepolymer12914822.11Canis lupus (gray wolf)
57v, K, C, D, I...MAGNESIUM IONnon-polymer24.3220Chemie (MG)
58g, j, m, o, pZINC IONnon-polymer65.45Chemie (ZN)
Sequence modifications
F: 1 - 247 (UniProt: G1TUB1)
PDBExternal DatabaseDetails
Arg 61Gly 61conflict
Arg 93Gly 93conflict
Met 131Val 131conflict
Ile 153Val 153conflict
G: 1 - 319 (UniProt: G1STW0)
PDBExternal DatabaseDetails
Gly 244Cys 244conflict
L: 1 - 211 (UniProt: G1TPV0)
PDBExternal DatabaseDetails
Ile 46-insertion
Ala 47-insertion
Pro 48-insertion
Arg 49-insertion
Pro 50-insertion
Ala 51-insertion
Ala 52-insertion
Gly 53-insertion
Pro 54-insertion
N: 0 - 204 (UniProt: G1T0C1)
PDBExternal DatabaseDetails
Gly 2Ala 3conflict
R: 1 - 196 (UniProt: G1TJR3)
PDBExternal DatabaseDetails
Arg 38Cys 38conflict
Arg 64Gln 64conflict
Thr 94Lys 94conflict
U: 1 - 128 (UniProt: G1TSG1)
PDBExternal DatabaseDetails
Leu 18Val 18conflict
Gly 32Arg 32conflict
Ala 36Glu 36conflict
Phe 39Ser 39conflict
Gly 54Arg 54conflict
Val 60Ala 60conflict
Ser 62Thr 62conflict
Leu 63Ile 63conflict
Arg 97His 97conflict
Thr 106Ser 106conflict
Glu 126Asp 126conflict
k: 1 - 70 (UniProt: G1U001)
PDBExternal DatabaseDetails
Lys 24Asn 24conflict
m: 10 - 102 (UniProt: A0A2K5PSA0)
PDBExternal DatabaseDetails
Met 1-initiating methionine
Gly 2-expression tag
Asp 3-expression tag
Pro 4-expression tag
Glu 5-expression tag
Ser 6-expression tag
Gly 7-expression tag
Gly 8-expression tag
Cys 9-expression tag
u: 1 - 120 (GenBank: X06789.1)
PDBExternal DatabaseDetails
U 2N 2conflict
C 36N 36conflict
U 102N 102conflict
U 112N 112conflict
U 114N 114conflict
U 119C 119conflict
U 120N 120conflict
w: 2 - 403 (UniProt: G1TL06)
PDBExternal DatabaseDetails
Met 1-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains56
Total formula weight2390275.4
Non-Polymers*Number of molecules225
Total formula weight5674.1
All*Total formula weight2395949.5
*Water molecules are not included.

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon