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7THC

Structure of Cyclophilin D Peptidyl-Prolyl Isomerase Domain bound to Macrocyclic Inhibitor B25

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Peptidyl-prolyl cis-trans isomerase F, mitochondrialpolymer16317595.11UniProt (P30405)
Pfam (PF00160)
Homo sapiens (human)PPIase F,Cyclophilin D,CyP-D,CypD,Cyclophilin F,Mitochondrial cyclophilin,CyP-M,Rotamase F
2B
(A)
3-(4'-{[(4S,7S,11R,13E,19S)-19-{[2-(2-aminoethoxy)ethyl]carbamoyl}-7-benzyl-3,6,12,15,21-pentaoxo-1,3,4,5,6,7,8,9,10,12,15,16,17,18,19,20,21,22-octadecahydro-2H-7,11-methano-2,5,11,16,20-benzopentaazacyclotetracosin-4-yl]methyl}[1,1'-biphenyl]-4-yl)prop-2-ynoic acidnon-polymer924.01Chemie (I4Z)
3C
(A)
waterwater18.0243Chemie (HOH)
Sequence modifications
A: 45 - 207 (UniProt: P30405)
PDBExternal DatabaseDetails
Ile 175Lys 175engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight17595.1
Non-Polymers*Number of molecules1
Total formula weight924.0
All*Total formula weight18519.1
*Water molecules are not included.

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PDB entries from 2025-06-18

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