Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E, I (A, C, E) | HIV-1 Envelope ApexGT5 gp120 | polymer | 473 | 53196.5 | 3 | Human immunodeficiency virus 1 | ||
| 2 | B, F, J (B, D, F) | HIV-1 Envelope ApexGT5 gp41 | polymer | 153 | 17134.3 | 3 | UniProt (Q2N0S6) | Human immunodeficiency virus 1 | TM, Glycoprotein 41, gp41 |
| 3 | C, G, K (J, M, O) | RM20A3 Fab Heavy Chain | polymer | 125 | 13511.1 | 3 | Macaca mulatta (Rhesus monkey) | ||
| 4 | D, H, L (K, N, P) | RM20A3 Fab Light Chain | polymer | 128 | 13508.8 | 3 | Macaca mulatta (Rhesus monkey) | ||
| 5 | M (H) | GT5-d42.16 Fab Heavy Chain | polymer | 134 | 15126.6 | 1 | Mus musculus (mouse) | ||
| 6 | N (L) | GT5-d42.16 Fab Light Chain | polymer | 107 | 11605.9 | 1 | Mus musculus (mouse) | ||
| 7 | CA, DA, FA, GA, O... (c, d, f, g, G...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 10 | In PDB GlyTouCan (G42666HT) | |||
| 8 | EA, Q, Y (e, Q, Y) | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 3 | In PDB GlyTouCan (G81315DD) | |||
| 9 | HA, R (h, R) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 2 | In PDB GlyTouCan (G15407YE) | |||
| 10 | S (S) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 1 | In PDB | |||
| 11 | AA, IA, T (a, i, T) | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 3 | In PDB GlyTouCan (G86851RC) | |||
| 12 | BA, JA, U (b, j, U) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 3 | In PDB GlyTouCan (G21290RB) | |||
| 13 | AB, BB, CB, DB, EB... (C, A, D, E, B...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 41 | Chemie (NAG) |
Sequence modifications
B, D, F: 510 - 664 (UniProt: Q2N0S6)
| PDB | External Database | Details |
|---|---|---|
| Ser 517 | Phe 516 | conflict |
| Pro 559 | Ile 556 | conflict |
| Pro 561 | Ala 558 | conflict |
| Asp 568 | Leu 565 | conflict |
| His 570 | Val 567 | conflict |
| His 585 | Arg 582 | conflict |
| Cys 605 | Thr 602 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 14 |
| Total formula weight | 318784.8 | |
| Branched | Number of molecules | 22 |
| Total formula weight | 11711.9 | |
| Non-Polymers* | Number of molecules | 41 |
| Total formula weight | 9069.5 | |
| All* | Total formula weight | 339566.2 |
