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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7ST7

Pre translocation intermediate stalled with viomycin and bound with EF-G in a GDP and Pi state (Structure III-vio)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1123S rRNApolymer2903941305.31GenBank (802133627)Escherichia coli K-12
225S rRNApolymer12038813.11GenBank (1266961702)Escherichia coli K-12
3b50S ribosomal protein L2polymer27129663.21UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL2
4c50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL3
5d50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL4
6e50S ribosomal protein L5polymer17720073.21UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL5
7f50S ribosomal protein L6polymer17618801.61UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL6
8g50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL9
9a50S ribosomal protein L1polymer22323735.51UniProt (P0A7L0)
Pfam (PF00687)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL1
10i50S ribosomal protein L11polymer14114763.21UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL11
11j50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL13
12k50S ribosomal protein L14polymer12213451.91UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL14
13l50S ribosomal protein L15polymer14314877.31UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL15
14m50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL16
15n50S ribosomal protein L17polymer12013721.91UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL17
16o50S ribosomal protein L18polymer11612663.51UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL18
17p50S ribosomal protein L19polymer11413028.11UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL19
18q50S ribosomal protein L20polymer11713396.81UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL20
19r50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL21
20s50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL22
21t50S ribosomal protein L23polymer9310546.51UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL23
22u50S ribosomal protein L24polymer10211078.91UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL24
23v50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL25
24w50S ribosomal protein L27polymer758174.41UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL27
25x50S ribosomal protein L28polymer778896.41UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL28
26y50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL29
27z50S ribosomal protein L30polymer586423.61UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL30
28A50S ribosomal protein L31polymer667516.71UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL31-A
29B50S ribosomal protein L32polymer566332.21UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL32
30C50S ribosomal protein L33polymer505814.81UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL33
31D50S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL34
32E50S ribosomal protein L35polymer647181.81UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL35,Ribosomal protein A
33F50S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL36-A,Ribosomal protein B
34H30S ribosomal protein S3polymer20623078.81UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS3
35L30S ribosomal protein S7polymer15116861.51UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS7
36N30S ribosomal protein S9polymer12714554.91UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS9
37O30S ribosomal protein S10polymer9811197.01UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS10
38R30S ribosomal protein S13polymer11412625.81UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS13
39S30S ribosomal protein S14polymer10011475.41UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS14
40X30S ribosomal protein S19polymer799057.61UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS19
41316S rRNApolymer1539498725.41GenBank (1126835768)Escherichia coli K-12
424mRNApolymer196211.81Escherichia coli K-12
43G30S ribosomal protein S2polymer21824253.91UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS2
44I30S ribosomal protein S4polymer20523383.01UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS4
45J30S ribosomal protein S5polymer15716532.11UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS5
46K30S ribosomal protein S6polymer10011669.41UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS6
47M30S ribosomal protein S8polymer12914015.41UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS8
48P30S ribosomal protein S11polymer11612388.11UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS11
49Q30S ribosomal protein S12polymer12313637.01UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS12
50T30S ribosomal protein S15polymer8810159.61UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS15
51U30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS16
52V30S ribosomal protein S17polymer809263.91UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS17
53W30S ribosomal protein S18polymer657606.81UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS18
54Y30S ribosomal protein S20polymer859506.21UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS20
55Z30S ribosomal protein S21polymer657763.11UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS21
568Elongation factor Gpolymer69776902.21UniProt (U9Y1U4)
In PDB		Escherichia coli K-12EF-G
576tRNA fMetpolymer7724802.81GenBank (1275521620)Escherichia coli K-12
585tRNA Propolymer7624533.51GenBank (1848934315)Escherichia coli K-12
59hViomycinpolymer6703.71BIRD (PRD_000226)Streptomyces californicus
608GUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
618PHOSPHATE IONnon-polymer95.01Chemie (PO4)
Sequence modifications
1: 1 - 2903 (GenBank: 802133627)
PDBExternal DatabaseDetails
C 747U 2724742conflict
2: 1 - 119 (GenBank: 1266961702)
PDBExternal DatabaseDetails
A 120-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains59
Total formula weight2283541.9
Non-Polymers*Number of molecules2
Total formula weight538.2
All*Total formula weight2284080.0
*Water molecules are not included.

221051

PDB entries from 2024-06-12

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