7SPO
Crystal structure of the SARS-CoV-2 receptor binding domain in complex with VNAR 3B4
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B | Spike protein S1 | polymer | 213 | 24003.8 | 2 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
2 | C, D | VNAR 3B4 | polymer | 141 | 15607.3 | 2 | Squalus acanthias (Arabian camel) | ||
3 | L, M | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 2 | In PDB GlyTouCan (G21290RB) | |||
4 | A, B | 1,2-ETHANEDIOL | non-polymer | 62.1 | 7 | Chemie (EDO) | |||
5 | water | water | 18.0 | 247 | Chemie (HOH) |
Sequence modifications
A, B: 330 - 532 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Glu 327 | - | expression tag |
Thr 328 | - | expression tag |
Gly 329 | - | expression tag |
Lys 533 | - | expression tag |
His 534 | - | expression tag |
His 535 | - | expression tag |
His 536 | - | expression tag |
His 537 | - | expression tag |
His 538 | - | expression tag |
His 539 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 4 |
Total formula weight | 79222.3 | |
Branched | Number of molecules | 2 |
Total formula weight | 1141.1 | |
Non-Polymers* | Number of molecules | 7 |
Total formula weight | 434.5 | |
All* | Total formula weight | 80797.9 |