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7SO9

SARS-CoV-2 S B.1.617.2 delta variant + S2M11 + S2L20 Global Refinement

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, F, KSpike glycoproteinpolymer1275141522.93UniProt (P0DTC2)
Pfam (PF16451)
Pfam (PF09408)
Pfam (PF19209)
Pfam (PF01601)
In PDB
Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2)S glycoprotein,E2,Peplomer protein
2D, G, LS2M11 Fab light chainpolymer10411208.53Homo sapiens
3E, H, MS2M11 Fab heavy chainpolymer12213651.23Homo sapiens
4B, I, NS2L20 Fab light chainpolymer10711829.13Homo sapiens
5C, J, OS2L20 Fab heavy chainpolymer12113454.03Homo sapiens
6P, Q, Ralpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched367.33In PDB
GlyTouCan (G86851RC)
7A, K, F2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.245Chemie (NAG)
8waterwater18.0354Chemie (HOH)
Sequence modifications
A, F, K: 1 - 1208 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
Arg 19Thr 19variant
Asp 142Gly 142variant
-Glu 156deletion
-Phe 157deletion
Gly 158Arg 158variant
Arg 452Leu 452variant
Lys 478Thr 478variant
Gly 614Asp 614variant
Arg 681Pro 681variant
Cys 707Tyr 707variant
Pro 817Phe 817variant
Cys 883Thr 883variant
Pro 892Ala 892variant
Pro 899Ala 899variant
Pro 942Ala 942variant
Asn 950Asp 950variant
Pro 987Val 987variant
Gly 1209-expression tag
Ser 1210-expression tag
Gly 1211-expression tag
Tyr 1212-expression tag
Ile 1213-expression tag
Pro 1214-expression tag
Glu 1215-expression tag
Ala 1216-expression tag
Pro 1217-expression tag
Arg 1218-expression tag
Asp 1219-expression tag
Gly 1220-expression tag
Gln 1221-expression tag
Ala 1222-expression tag
Tyr 1223-expression tag
Val 1224-expression tag
Arg 1225-expression tag
Lys 1226-expression tag
Asp 1227-expression tag
Gly 1228-expression tag
Glu 1229-expression tag
Trp 1230-expression tag
Val 1231-expression tag
Leu 1232-expression tag
Leu 1233-expression tag
Ser 1234-expression tag
Thr 1235-expression tag
Phe 1236-expression tag
Leu 1237-expression tag
Gly 1238-expression tag
Arg 1239-expression tag
Ser 1240-expression tag
Leu 1241-expression tag
Glu 1242-expression tag
Val 1243-expression tag
Leu 1244-expression tag
Phe 1245-expression tag
Gln 1246-expression tag
Gly 1247-expression tag
Pro 1248-expression tag
Gly 1249-expression tag
Ser 1250-expression tag
Gly 1251-expression tag
Gly 1252-expression tag
Leu 1253-expression tag
Asn 1254-expression tag
Asp 1255-expression tag
Ile 1256-expression tag
Phe 1257-expression tag
Glu 1258-expression tag
Ala 1259-expression tag
Gln 1260-expression tag
Lys 1261-expression tag
Ile 1262-expression tag
Glu 1263-expression tag
Trp 1264-expression tag
His 1265-expression tag
Glu 1266-expression tag
Gly 1267-expression tag
Ser 1268-expression tag
Gly 1269-expression tag
His 1270-expression tag
His 1271-expression tag
His 1272-expression tag
His 1273-expression tag
His 1274-expression tag
His 1275-expression tag
His 1276-expression tag
His 1277-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains15
Total formula weight574997.0
BranchedNumber of molecules3
Total formula weight1102.0
Non-Polymers*Number of molecules45
Total formula weight9954.4
All*Total formula weight586053.4
*Water molecules are not included.

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PDB entries from 2024-05-29

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