7SO9
SARS-CoV-2 S B.1.617.2 delta variant + S2M11 + S2L20 Global Refinement
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, F, K | Spike glycoprotein | polymer | 1275 | 141522.9 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein |
2 | D, G, L | S2M11 Fab light chain | polymer | 104 | 11208.5 | 3 | Homo sapiens | ||
3 | E, H, M | S2M11 Fab heavy chain | polymer | 122 | 13651.2 | 3 | Homo sapiens | ||
4 | B, I, N | S2L20 Fab light chain | polymer | 107 | 11829.1 | 3 | Homo sapiens | ||
5 | C, J, O | S2L20 Fab heavy chain | polymer | 121 | 13454.0 | 3 | Homo sapiens | ||
6 | P, Q, R | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 3 | In PDB GlyTouCan (G86851RC) | |||
7 | A, K, F | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 45 | Chemie (NAG) | |||
8 | water | water | 18.0 | 354 | Chemie (HOH) |
Sequence modifications
A, F, K: 1 - 1208 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Arg 19 | Thr 19 | variant |
Asp 142 | Gly 142 | variant |
- | Glu 156 | deletion |
- | Phe 157 | deletion |
Gly 158 | Arg 158 | variant |
Arg 452 | Leu 452 | variant |
Lys 478 | Thr 478 | variant |
Gly 614 | Asp 614 | variant |
Arg 681 | Pro 681 | variant |
Cys 707 | Tyr 707 | variant |
Pro 817 | Phe 817 | variant |
Cys 883 | Thr 883 | variant |
Pro 892 | Ala 892 | variant |
Pro 899 | Ala 899 | variant |
Pro 942 | Ala 942 | variant |
Asn 950 | Asp 950 | variant |
Pro 987 | Val 987 | variant |
Gly 1209 | - | expression tag |
Ser 1210 | - | expression tag |
Gly 1211 | - | expression tag |
Tyr 1212 | - | expression tag |
Ile 1213 | - | expression tag |
Pro 1214 | - | expression tag |
Glu 1215 | - | expression tag |
Ala 1216 | - | expression tag |
Pro 1217 | - | expression tag |
Arg 1218 | - | expression tag |
Asp 1219 | - | expression tag |
Gly 1220 | - | expression tag |
Gln 1221 | - | expression tag |
Ala 1222 | - | expression tag |
Tyr 1223 | - | expression tag |
Val 1224 | - | expression tag |
Arg 1225 | - | expression tag |
Lys 1226 | - | expression tag |
Asp 1227 | - | expression tag |
Gly 1228 | - | expression tag |
Glu 1229 | - | expression tag |
Trp 1230 | - | expression tag |
Val 1231 | - | expression tag |
Leu 1232 | - | expression tag |
Leu 1233 | - | expression tag |
Ser 1234 | - | expression tag |
Thr 1235 | - | expression tag |
Phe 1236 | - | expression tag |
Leu 1237 | - | expression tag |
Gly 1238 | - | expression tag |
Arg 1239 | - | expression tag |
Ser 1240 | - | expression tag |
Leu 1241 | - | expression tag |
Glu 1242 | - | expression tag |
Val 1243 | - | expression tag |
Leu 1244 | - | expression tag |
Phe 1245 | - | expression tag |
Gln 1246 | - | expression tag |
Gly 1247 | - | expression tag |
Pro 1248 | - | expression tag |
Gly 1249 | - | expression tag |
Ser 1250 | - | expression tag |
Gly 1251 | - | expression tag |
Gly 1252 | - | expression tag |
Leu 1253 | - | expression tag |
Asn 1254 | - | expression tag |
Asp 1255 | - | expression tag |
Ile 1256 | - | expression tag |
Phe 1257 | - | expression tag |
Glu 1258 | - | expression tag |
Ala 1259 | - | expression tag |
Gln 1260 | - | expression tag |
Lys 1261 | - | expression tag |
Ile 1262 | - | expression tag |
Glu 1263 | - | expression tag |
Trp 1264 | - | expression tag |
His 1265 | - | expression tag |
Glu 1266 | - | expression tag |
Gly 1267 | - | expression tag |
Ser 1268 | - | expression tag |
Gly 1269 | - | expression tag |
His 1270 | - | expression tag |
His 1271 | - | expression tag |
His 1272 | - | expression tag |
His 1273 | - | expression tag |
His 1274 | - | expression tag |
His 1275 | - | expression tag |
His 1276 | - | expression tag |
His 1277 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 15 |
Total formula weight | 574997.0 | |
Branched | Number of molecules | 3 |
Total formula weight | 1102.0 | |
Non-Polymers* | Number of molecules | 45 |
Total formula weight | 9954.4 | |
All* | Total formula weight | 586053.4 |