7SK4
Cryo-EM structure of ACKR3 in complex with chemokine N-terminal mutant CXCL12_LRHQ, an intracellular Fab, and an extracellular Fab
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Atypical chemokine receptor 3 | polymer | 393 | 45196.4 | 1 | UniProt (P25106) Pfam (PF00001) | Homo sapiens (human) | C-X-C chemokine receptor type 7,CXC-R7,CXCR-7,Chemokine orphan receptor 1,G-protein coupled receptor 159,G-protein coupled receptor RDC1 homolog,RDC-1 |
| 2 | B (B) | Stromal cell-derived factor 1 | polymer | 69 | 8189.7 | 1 | UniProt (P48061) Pfam (PF00048) | Homo sapiens (human) | SDF-1,hSDF-1,C-X-C motif chemokine 12,Intercrine reduced in hepatomas,IRH,hIRH,Pre-B cell growth-stimulating factor,PBSF |
| 3 | C (C) | CID25 Fab light chain | polymer | 215 | 23531.1 | 1 | Homo sapiens | ||
| 4 | D (D) | CID25 Fab heavy chain | polymer | 236 | 25461.4 | 1 | Homo sapiens | ||
| 5 | E (E) | CID24 Fab light chain | polymer | 215 | 23471.0 | 1 | Homo sapiens | ||
| 6 | F (F) | CID24 Fab heavy chain | polymer | 238 | 25380.2 | 1 | Homo sapiens | ||
| 7 | G, H (A) | CHOLESTEROL | non-polymer | 386.7 | 2 | Chemie (CLR) PubChem (16219173) PubChem (16758052) PubChem (304) PubChem (176980071) PubChem (40477506) PubChem (40557614) PubChem (42579431) PubChem (42579432) PubChem (18640088) PubChem (1715243) PubChem (1715244) PubChem (45044259) PubChem (23423981) PubChem (49853509) PubChem (50990013) PubChem (52934537) PubChem (56621683) PubChem (191463) PubChem (57915018) PubChem (57939063) PubChem (58428240) PubChem (58445498) PubChem (58663286) PubChem (368063) PubChem (369319) PubChem (44654663) PubChem (59450329) PubChem (59628412) PubChem (59965215) PubChem (71234641) PubChem (59993755) PubChem (60001463) PubChem (66634651) PubChem (68055877) PubChem (68166463) PubChem (68315613) PubChem (46937002) PubChem (70795838) PubChem (70797612) PubChem (70954610) PubChem (70957185) PubChem (71463909) PubChem (638019) PubChem (59274407) PubChem (1549081) PubChem (1553803) PubChem (68311425) PubChem (68311398) PubChem (143173313) PubChem (177156123) PubChem (89951918) PubChem (90224410) PubChem (5997) PubChem (5283629) PubChem (5284644) PubChem (1551269) PubChem (90070115) PubChem (91298236) PubChem (5315842) PubChem (117965027) PubChem (6432564) PubChem (6710666) PubChem (124146240) PubChem (7059399) PubChem (124897607) PubChem (124896959) PubChem (6419195) PubChem (10861996) PubChem (132837164) PubChem (101624109) PubChem (6994560) PubChem (7055705) PubChem (7055706) PubChem (7059398) PubChem (7059400) PubChem (7059635) PubChem (7103033) PubChem (7182477) PubChem (7182478) PubChem (11834483) PubChem (11888915) PubChem (11888914) PubChem (9909206) PubChem (10045721) PubChem (71168115) PubChem (10134774) PubChem (10293553) PubChem (71173031) PubChem (124225449) PubChem (138967089) PubChem (11003580) PubChem (11025495) PubChem (11058155) PubChem (139566851) PubChem (124429284) PubChem (11463329) PubChem (11868624) PubChem (11868625) PubChem (11869366) PubChem (11869367) PubChem (11869368) PubChem (11869369) PubChem (12120344) PubChem (12156156) PubChem (12303135) PubChem (12303148) PubChem (12303156) PubChem (12303159) PubChem (12303160) PubChem (15939944) PubChem (124909223) PubChem (124909224) PubChem (124909225) PubChem (171828367) PubChem (173516975) PubChem (130459183) PubChem (131992107) PubChem (139568882) PubChem (142983773) PubChem (144054483) PubChem (144209461) PubChem (144331236) PubChem (144808354) PubChem (145053568) PubChem (145157652) PubChem (145215073) PubChem (145230478) PubChem (146320991) PubChem (147857230) PubChem (154993519) PubChem (158603858) PubChem (162906452) PubChem (162906453) PubChem (162906454) PubChem (162906455) PubChem (162906456) PubChem (162906457) PubChem (163255768) PubChem (163389210) PubChem (164665303) PubChem (166553771) PubChem (166712004) PubChem (170116175) PubChem (171764280) PubChem (171817101) PubChem (171817104) PubChem (174285573) |
Sequence modifications
A: 2 - 362 (UniProt: P25106)
B: 1 - 68 (UniProt: P48061)
| PDB | External Database | Details |
|---|---|---|
| Gly -1 | - | cloning artifact |
| Ala 0 | - | cloning artifact |
| Pro 1 | - | cloning artifact |
| Gly 363 | - | expression tag |
| Arg 364 | - | expression tag |
| Pro 365 | - | expression tag |
| Leu 366 | - | expression tag |
| Glu 367 | - | expression tag |
| Val 368 | - | expression tag |
| Leu 369 | - | expression tag |
| Phe 370 | - | expression tag |
| Gln 371 | - | expression tag |
| Gly 372 | - | expression tag |
| Pro 373 | - | expression tag |
| His 374 | - | expression tag |
| His 375 | - | expression tag |
| His 376 | - | expression tag |
| His 377 | - | expression tag |
| His 378 | - | expression tag |
| His 379 | - | expression tag |
| His 380 | - | expression tag |
| His 381 | - | expression tag |
| His 382 | - | expression tag |
| His 383 | - | expression tag |
| Asp 384 | - | expression tag |
| Tyr 385 | - | expression tag |
| Lys 386 | - | expression tag |
| Asp 387 | - | expression tag |
| Asp 388 | - | expression tag |
| Asp 389 | - | expression tag |
| Asp 390 | - | expression tag |
| Lys 391 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Leu 0 | - | engineered mutation |
| Arg 1 | Lys 22 | engineered mutation |
| His 2 | Pro 23 | engineered mutation |
| Gln 3 | Val 24 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 151229.8 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 773.3 | |
| All* | Total formula weight | 152003.1 |
