7SBW

Structure of OC43 spike in complex with polyclonal Fab5 (Donor 1051)

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	H, L	Human polyclonal Fab model with polyalanine backbone - Heavy chain	polymer	119	10145.5	2		Homo sapiens
2	J, A, B	Spike protein	polymer	1367	151119.9	3	UniProt (A0A7U1BGV5) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) UniProt (by SIFTS) (A0A0B4N7I3) In PDB	Human coronavirus OC43 (HCoV-OC43)
3	c, C, D, h, G...	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		586.5	11	In PDB GlyTouCan (G15407YE)
4	a, b, d, e, f...	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	20	In PDB GlyTouCan (G42666HT)
5	J, A, B	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	12	Chemie (NAG)
6	A, B	Sapienic acid	non-polymer		254.4	3	Chemie (8Z9)

Sequence modifications

J, A, B: 1 - 1287 (UniProt: A0A7U1BGV5)

PDB	External Database	Details
His 177	Leu 177	conflict
Ile 261	Val 261	conflict
Pro 545	Ser 545	conflict
Asn 762	Thr 762	conflict
Pro 1079	Ala 1079	conflict
Pro 1080	Leu 1080	conflict
Met 1217	Ile 1217	conflict
Phe 1269	Leu 1269	conflict
Gly 1288	-	expression tag
Ser 1289	-	expression tag
Gly 1290	-	expression tag
Tyr 1291	-	expression tag
Ile 1292	-	expression tag
Pro 1293	-	expression tag
Glu 1294	-	expression tag
Ala 1295	-	expression tag
Pro 1296	-	expression tag
Arg 1297	-	expression tag
Asp 1298	-	expression tag
Gly 1299	-	expression tag
Gln 1300	-	expression tag
Ala 1301	-	expression tag
Tyr 1302	-	expression tag
Val 1303	-	expression tag
Arg 1304	-	expression tag
Lys 1305	-	expression tag
Asp 1306	-	expression tag
Gly 1307	-	expression tag
Glu 1308	-	expression tag
Trp 1309	-	expression tag
Val 1310	-	expression tag
Leu 1311	-	expression tag
Leu 1312	-	expression tag
Ser 1313	-	expression tag
Thr 1314	-	expression tag
Phe 1315	-	expression tag
Leu 1316	-	expression tag
Gly 1317	-	expression tag
Arg 1318	-	expression tag
Ser 1319	-	expression tag
Leu 1320	-	expression tag
Glu 1321	-	expression tag
Val 1322	-	expression tag
Leu 1323	-	expression tag
Phe 1324	-	expression tag
Gln 1325	-	expression tag
Gly 1326	-	expression tag
Pro 1327	-	expression tag
Gly 1328	-	expression tag
His 1329	-	expression tag
His 1330	-	expression tag
His 1331	-	expression tag
His 1332	-	expression tag
His 1333	-	expression tag
His 1334	-	expression tag
His 1335	-	expression tag
His 1336	-	expression tag
Ser 1337	-	expression tag
Ala 1338	-	expression tag
Trp 1339	-	expression tag
Ser 1340	-	expression tag
His 1341	-	expression tag
Pro 1342	-	expression tag
Gln 1343	-	expression tag
Phe 1344	-	expression tag
Glu 1345	-	expression tag
Lys 1346	-	expression tag
Gly 1347	-	expression tag
Gly 1348	-	expression tag
Gly 1349	-	expression tag
Ser 1350	-	expression tag
Gly 1351	-	expression tag
Gly 1352	-	expression tag
Gly 1353	-	expression tag
Gly 1354	-	expression tag
Ser 1355	-	expression tag
Gly 1356	-	expression tag
Gly 1357	-	expression tag
Ser 1358	-	expression tag
Ala 1359	-	expression tag
Trp 1360	-	expression tag
Ser 1361	-	expression tag
His 1362	-	expression tag
Pro 1363	-	expression tag
Gln 1364	-	expression tag
Phe 1365	-	expression tag
Glu 1366	-	expression tag
Lys 1367	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	5
	Total formula weight	473650.7
Branched	Number of molecules	31
	Total formula weight	14940.0
Non-Polymers*	Number of molecules	15
	Total formula weight	3417.7
All*	Total formula weight	492008.4

*Water molecules are not included.