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7S1R

PRMT5/MEP50 crystal structure with MTA and a phthalazinone inhibitor bound (compound (M)-31)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Protein arginine N-methyltransferase 5polymer64573763.61UniProt (O14744)
Pfam (PF17285)
Pfam (PF05185)
Pfam (PF17286)
Homo sapiens (Human)72 kDa ICln-binding protein,Histone-arginine N-methyltransferase PRMT5,Jak-binding protein 1,Shk1 kinase-binding protein 1 homolog,SKB1Hs
2B
(B)
Methylosome protein 50polymer35037862.41UniProt (Q9BQA1)
Pfam (PF00400)
Homo sapiens (Human)MEP-50,Androgen receptor cofactor p44,WD repeat-containing protein 77,p44/Mep50
3C
(A)
5'-DEOXY-5'-METHYLTHIOADENOSINEnon-polymer297.31Chemie (MTA)
4D
(A)
{7-[(5M)-5-(1-cyano-3-fluoronaphthalen-2-yl)-1-methyl-1H-pyrazol-4-yl]-4-oxo-3,4-dihydrophthalazin-1-yl}methanaminiumnon-polymer425.41Chemie (85E)
5E, F
(A, B)
waterwater18.0380Chemie (HOH)
Sequence modifications
A: 2 - 637 (UniProt: O14744)
PDBExternal DatabaseDetails
Met -7-initiating methionine
Asp -6-expression tag
Tyr -5-expression tag
Lys -4-expression tag
Asp -3-expression tag
Asp -2-expression tag
Asp -1-expression tag
Asp 0-expression tag
Lys 1-expression tag
B: 2 - 342 (UniProt: Q9BQA1)
PDBExternal DatabaseDetails
Met -7-initiating methionine
His -6-expression tag
His -5-expression tag
His -4-expression tag
His -3-expression tag
His -2-expression tag
His -1-expression tag
His 0-expression tag
His 1-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight111626.0
Non-Polymers*Number of molecules2
Total formula weight722.8
All*Total formula weight112348.8
*Water molecules are not included.

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PDB entries from 2025-06-11

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