7S1J
Wild-type Escherichia coli ribosome with antibiotic radezolid
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 1 | 30S ribosomal protein S19 | polymer | 92 | 10455.4 | 1 | UniProt (S1EA57) Pfam (PF00203) UniProt (by SIFTS) (P0A7U3) In PDB | Escherichia coli | |
2 | 2 | 30S ribosomal protein S20 | polymer | 87 | 9708.5 | 1 | UniProt (C3TRH7) Pfam (PF01649) UniProt (by SIFTS) (P0A7U7) In PDB | Escherichia coli | |
3 | 3 | 30S ribosomal protein S21 | polymer | 71 | 8524.0 | 1 | UniProt (A0A0E2L2J1) Pfam (PF01165) UniProt (by SIFTS) (P68679) In PDB | Escherichia coli | |
4 | C | 16S rRNA | polymer | 1540 | 499054.6 | 1 | GenBank (1758835854) | Escherichia coli | |
5 | D | 30S ribosomal protein S2 | polymer | 241 | 26781.7 | 1 | UniProt (C3TPN2) Pfam (PF00318) UniProt (by SIFTS) (P0A7V0) In PDB | Escherichia coli | |
6 | E | 30S ribosomal protein S3 | polymer | 233 | 26031.3 | 1 | UniProt (B7MCS9) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P0A7V3) In PDB | Escherichia coli | |
7 | F | 30S ribosomal protein S4 | polymer | 206 | 23514.2 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) In PDB | Escherichia coli | |
8 | G | 30S ribosomal protein S5 | polymer | 167 | 17629.4 | 1 | UniProt (P0A7W1) Pfam (PF03719) Pfam (PF00333) In PDB | Escherichia coli | |
9 | H | 30S ribosomal protein S6 | polymer | 135 | 15727.5 | 1 | UniProt (P02358) Pfam (PF01250) In PDB | Escherichia coli | Small ribosomal subunit protein bS6 |
10 | I | 23S rRNA | polymer | 2904 | 941811.6 | 1 | Escherichia coli | ||
11 | J | 5S rRNA | polymer | 120 | 38790.1 | 1 | GenBank (1273279017) | Escherichia coli | |
12 | K | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) In PDB | Escherichia coli | Large ribosomal subunit protein uL2 |
13 | L | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) In PDB | Escherichia coli | Large ribosomal subunit protein uL3 |
14 | M | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (L3C159) Pfam (PF00573) UniProt (by SIFTS) (P60723) In PDB | Escherichia coli | |
15 | N | 50S ribosomal protein L5 | polymer | 179 | 20333.6 | 1 | UniProt (A0A829CFT8) Pfam (PF00281) Pfam (PF00673) UniProt (by SIFTS) (P62399) In PDB | Escherichia coli | |
16 | O | 50S ribosomal protein L6 | polymer | 177 | 18932.8 | 1 | UniProt (A0A862ZNS7) Pfam (PF00347) UniProt (by SIFTS) (P0AG55) In PDB | Escherichia coli | |
17 | P | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (V0YZK9) Pfam (PF01281) Pfam (PF03948) UniProt (by SIFTS) (P0A7R1) In PDB | Escherichia coli | |
18 | Q | 50S ribosomal protein L31 | polymer | 70 | 7887.1 | 1 | UniProt (J7R8B2) Pfam (PF01197) UniProt (by SIFTS) (P0A7M9) In PDB | Escherichia coli | |
19 | R | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (S1EW51) Pfam (PF00572) UniProt (by SIFTS) (P0AA10) In PDB | Escherichia coli | |
20 | S | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (S1NW45) Pfam (PF00238) UniProt (by SIFTS) (P0ADY3) In PDB | Escherichia coli | |
21 | T | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (A0A037Y8L6) Pfam (PF00828) UniProt (by SIFTS) (P02413) In PDB | Escherichia coli | |
22 | U | 50S ribosomal protein L16 | polymer | 136 | 15327.3 | 1 | Pfam (PF00252) UniProt (by SIFTS) (P0ADY7) In PDB | Escherichia coli | |
23 | V | 50S ribosomal protein L17 | polymer | 127 | 14393.7 | 1 | UniProt (A0A1X3LC97) Pfam (PF01196) UniProt (by SIFTS) (P0AG44) In PDB | Escherichia coli | |
24 | W | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (L3C145) Pfam (PF00861) UniProt (by SIFTS) (P0C018) In PDB | Escherichia coli | |
25 | X | 50S ribosomal protein L19 | polymer | 115 | 13159.3 | 1 | UniProt (V0AJX1) Pfam (PF01245) UniProt (by SIFTS) (P0A7K6) In PDB | Escherichia coli | |
26 | Y | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (B7MAS6) Pfam (PF00453) UniProt (by SIFTS) (P0A7L3) In PDB | Escherichia coli | |
27 | Z | Ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (A0A829CSJ4) Pfam (PF00829) UniProt (by SIFTS) (P0AG48) In PDB | Escherichia coli | |
28 | a | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (A0A829IKG4) Pfam (PF00237) UniProt (by SIFTS) (P61175) In PDB | Escherichia coli | |
29 | b | 50S ribosomal protein L23 | polymer | 100 | 11222.2 | 1 | UniProt (A0A829CFV1) Pfam (PF00276) UniProt (by SIFTS) (P0ADZ0) In PDB | Escherichia coli | |
30 | c | 50S ribosomal protein L24 | polymer | 104 | 11339.3 | 1 | UniProt (A0A1X3KWX7) Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (P60624) In PDB | Escherichia coli | |
31 | d | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (D7XH79) Pfam (PF01386) UniProt (by SIFTS) (P68919) In PDB | Escherichia coli | |
32 | e | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) In PDB | Escherichia coli | Large ribosomal subunit protein bL27 |
33 | f | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (A0A1X3JA73) Pfam (PF00830) UniProt (by SIFTS) (P0A7M2) In PDB | Escherichia coli | |
34 | g | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (D6IEL0) Pfam (PF00831) UniProt (by SIFTS) (P0A7M6) In PDB | Escherichia coli | |
35 | h | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (V0YKA9) Pfam (PF00327) UniProt (by SIFTS) (P0AG51) In PDB | Escherichia coli | |
36 | i | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (D7XI28) Pfam (PF01783) UniProt (by SIFTS) (P0A7N4) In PDB | Escherichia coli | |
37 | j | 50S ribosomal protein L33 | polymer | 55 | 6388.6 | 1 | UniProt (F4NQ61) Pfam (PF00471) UniProt (by SIFTS) (P0A7N9) In PDB | Escherichia coli | |
38 | k | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (B7MGC4) Pfam (PF00468) UniProt (by SIFTS) (P0A7P5) In PDB | Escherichia coli | |
39 | l | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (S1IK56) Pfam (PF01632) UniProt (by SIFTS) (P0A7Q1) In PDB | Escherichia coli | |
40 | m | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (A0A0E2L017) Pfam (PF00444) UniProt (by SIFTS) (P0A7Q6) In PDB | Escherichia coli | |
41 | n | 30S ribosomal protein S7 | polymer | 179 | 20055.2 | 1 | UniProt (P02359) Pfam (PF00177) In PDB | Escherichia coli | Small ribosomal subunit protein uS7 |
42 | o | 30S ribosomal protein S8 | polymer | 130 | 14146.6 | 1 | UniProt (D7XKZ3) Pfam (PF00410) UniProt (by SIFTS) (P0A7W7) In PDB | Escherichia coli | |
43 | p | 30S ribosomal protein S9 | polymer | 130 | 14886.3 | 1 | UniProt (A0A1Z3UZ18) Pfam (PF00380) UniProt (by SIFTS) (P0A7X3) In PDB | Escherichia coli | |
44 | q | 30S ribosomal protein S10 | polymer | 103 | 11755.6 | 1 | UniProt (V0ANK5) Pfam (PF00338) UniProt (by SIFTS) (P0A7R5) In PDB | Escherichia coli | |
45 | r | 30S ribosomal protein S11 | polymer | 129 | 13871.0 | 1 | UniProt (B7MCR3) Pfam (PF00411) UniProt (by SIFTS) (P0A7R9) In PDB | Escherichia coli | |
46 | t | 30S ribosomal protein S12 | polymer | 124 | 13768.2 | 1 | UniProt (P0A7S3) Pfam (PF00164) In PDB | Escherichia coli | |
47 | u | 30S ribosomal protein S13 | polymer | 118 | 13128.5 | 1 | UniProt (A0A7U9IV78) Pfam (PF00416) UniProt (by SIFTS) (P0A7S9) In PDB | Escherichia coli | |
48 | v | 30S ribosomal protein S14 | polymer | 101 | 11606.6 | 1 | UniProt (U9Y6H3) Pfam (PF00253) UniProt (by SIFTS) (P0AG59) In PDB | Escherichia coli | |
49 | w | 30S ribosomal protein S15 | polymer | 89 | 10290.8 | 1 | UniProt (D8EB41) Pfam (PF00312) UniProt (by SIFTS) (P0ADZ4) In PDB | Escherichia coli | |
50 | x | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (B7MIU7) Pfam (PF00886) UniProt (by SIFTS) (P0A7T3) In PDB | Escherichia coli | |
51 | y | 30S ribosomal protein S17 | polymer | 84 | 9724.5 | 1 | UniProt (A0A829A8C6) Pfam (PF00366) UniProt (by SIFTS) (P0AG63) In PDB | Escherichia coli | |
52 | z | 30S ribosomal protein S18 | polymer | 75 | 9005.5 | 1 | UniProt (A0A0E2KXL3) Pfam (PF01084) UniProt (by SIFTS) (P0A7T7) In PDB | Escherichia coli | |
53 | C, I, K, L, T... | MAGNESIUM ION | non-polymer | 24.3 | 199 | Chemie (MG) | |||
54 | I | Radezolid | non-polymer | 438.5 | 1 | Chemie (RD8) | |||
55 | Q, m | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
56 | water | water | 18.0 | 35 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 52 |
Total formula weight | 2139636.6 | |
Non-Polymers* | Number of molecules | 202 |
Total formula weight | 5406.0 | |
All* | Total formula weight | 2145042.5 |