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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7RXD

CryoEM structure of RBD domain of COVID-19 in complex with Legobody

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1BMaltodextrin-binding protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein Gpolymer54559233.21UniProt (A0A4Z0THX4)
UniProt (P99134)
UniProt (P06654)
Pfam (PF02216)
Pfam (PF01378)
In PDB		Escherichia coliIgG-binding protein A,Staphylococcal protein A,SpA,IgG-binding protein G
2HFab_8D3_2 heavy chainpolymer23425252.21Mus musculus (mouse)
3LFab_8D3_2 light chainpolymer21924095.91Mus musculus (mouse)
4NNb_RBDpolymer12914661.21Vicugna pacos (Alpaca Lama pacos)
5RSpike protein S1polymer23525995.61UniProt (P0DTC2)
Pfam (PF09408)
In PDB		Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2)
6Aalpha-D-glucopyranose-(1-4)-alpha-D-glucopyranosebranched342.31In PDB
BIRD (PRD_900001)
GlyTouCan (G07411ON)
Sequence modifications
B: 2 - 359 (UniProt: A0A4Z0THX4)
PDBExternal DatabaseDetails
Met 1-initiating methionine
B: 360 - 467 (UniProt: P99134)
PDBExternal DatabaseDetails
Ala 361Gln 44conflict
Leu 362Asn 45conflict
Ala 365Tyr 48conflict
Ile 367Val 50conflict
Ile 369Asn 52conflict
Thr 374Asn 57conflict
Glu 375Ala 58conflict
Glu 376Asp 59conflict
Val 391Gln 74conflict
Lys 393Ala 76conflict
Glu 394Asn 77conflict
Ile 395Val 78conflict
Ala 397Gly 80conflict
Lys 400Gln 83conflict
Glu 404Asp 87conflict
His 405Ser 88conflict
-Ala 93deletion
Gly 410Asp 94conflict
Gly 411Ala 95conflict
Ser 412Gln 96conflict
Gly 413Gln 97conflict
Gly 414Asn 98conflict
Ala 415Asn 99conflict
Gly 416Phe 100conflict
Ser 417Asn 101conflict
Gly 418Lys 102conflict
Gly 468-linker
Gly 469-linker
Gly 470-linker
Ser 471-linker
Gly 472-linker
Gly 473-linker
Gly 474-linker
Ser 475-linker
Gly 476-linker
Gly 477-linker
Ser 478-linker
B: 479 - 536 (UniProt: P06654)
PDBExternal DatabaseDetails
Gly 537-expression tag
Ser 538-expression tag
Gly 539-expression tag
His 540-expression tag
His 541-expression tag
His 542-expression tag
His 543-expression tag
His 544-expression tag
His 545-expression tag
R: 334 - 526 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
Gly 307-expression tag
Asp 308-expression tag
Tyr 309-expression tag
Lys 310-expression tag
Asp 311-expression tag
Asp 312-expression tag
Asp 313-expression tag
Asp 314-expression tag
Lys 315-expression tag
Gly 316-expression tag
Gly 317-expression tag
Glu 318-expression tag
Asn 319-expression tag
Leu 320-expression tag
Tyr 321-expression tag
Phe 322-expression tag
Gln 323-expression tag
Gly 324-expression tag
Gly 325-expression tag
Ser 326-expression tag
Gly 327-expression tag
Asp 328-expression tag
Ser 329-expression tag
Thr 330-expression tag
Gly 331-expression tag
Ser 332-expression tag
Ser 333-expression tag
Gly 527-expression tag
Gly 528-expression tag
Gly 529-expression tag
Ser 530-expression tag
Gly 531-expression tag
Ser 532-expression tag
Gly 533-expression tag
His 534-expression tag
His 535-expression tag
His 536-expression tag
His 537-expression tag
His 538-expression tag
His 539-expression tag
His 540-expression tag
His 541-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains5
Total formula weight149238.1
BranchedNumber of molecules1
Total formula weight342.3
All*Total formula weight149580.4
*Water molecules are not included.

222624

PDB entries from 2024-07-17

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