7R78
cryo-EM structure of DNMT5 quaternary complex with hemimethylated DNA, AMP-PNP and SAH
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | DNA repair protein Rad8 | polymer | 2348 | 263811.7 | 1 | UniProt (J9VI03) Pfam (PF00385) Pfam (PF00145) Pfam (PF00176) Pfam (PF00271) In PDB | Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) (Filobasidiella neoformans var. grubii) | |
2 | D | DNA (5'-D(P*CP*AP*GP*(5CM)P*GP*CP*AP*T)-3') | polymer | 36 | 11168.2 | 1 | Cryptococcus neoformans | ||
3 | E | DNA (5'-D(*TP*GP*CP*GP*CP*TP*GP*AP*CP*A)-3') | polymer | 36 | 10999.1 | 1 | Cryptococcus neoformans | ||
4 | A | S-ADENOSYL-L-HOMOCYSTEINE | non-polymer | 384.4 | 1 | Chemie (SAH) | |||
5 | A | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
6 | A | PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER | non-polymer | 506.2 | 1 | Chemie (ANP) | |||
7 | A | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) |
Sequence modifications
A: 58 - 2377 (UniProt: J9VI03)
PDB | External Database | Details |
---|---|---|
Met 30 | - | expression tag |
Ser 31 | - | expression tag |
Tyr 32 | - | expression tag |
Tyr 33 | - | expression tag |
His 34 | - | expression tag |
His 35 | - | expression tag |
His 36 | - | expression tag |
His 37 | - | expression tag |
His 38 | - | expression tag |
His 39 | - | expression tag |
Asp 40 | - | expression tag |
Tyr 41 | - | expression tag |
Asp 42 | - | expression tag |
Ile 43 | - | expression tag |
Pro 44 | - | expression tag |
Thr 45 | - | expression tag |
Thr 46 | - | expression tag |
Glu 47 | - | expression tag |
Asn 48 | - | expression tag |
Leu 49 | - | expression tag |
Tyr 50 | - | expression tag |
Phe 51 | - | expression tag |
Gln 52 | - | expression tag |
Gly 53 | - | expression tag |
Ala 54 | - | expression tag |
Met 55 | - | expression tag |
Gly 56 | - | expression tag |
Ser 57 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 285978.9 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 1242.0 | |
All* | Total formula weight | 287220.9 |