7R72
State E1 nucleolar 60S ribosome biogenesis intermediate - Spb4 local model
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 25S rRNA | polymer | 641 | 207253.6 | 1 | Saccharomyces cerevisiae BY4741 | ||
| 2 | B (2) | 5.8S rRNA | polymer | 72 | 23067.6 | 1 | Saccharomyces cerevisiae BY4741 | ||
| 3 | C (8) | Nucleolar complex protein 2 | polymer | 710 | 81719.3 | 1 | UniProt (P39744) Pfam (PF03715) | Saccharomyces cerevisiae BY4741 | |
| 4 | D (B) | 60S ribosomal protein L3 | polymer | 387 | 43850.8 | 1 | UniProt (P14126) Pfam (PF00297) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1 |
| 5 | E (G) | 60S ribosomal protein L8-A | polymer | 256 | 28175.8 | 1 | UniProt (P17076) Pfam (PF01248) | Saccharomyces cerevisiae BY4741 | L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5 |
| 6 | F (I) | Nucleolar complex-associated protein 3 | polymer | 663 | 75689.0 | 1 | UniProt (Q07896) Pfam (PF07540) Pfam (PF03914) | Saccharomyces cerevisiae BY4741 | |
| 7 | G (P) | 60S ribosomal protein L17-A | polymer | 184 | 20589.5 | 1 | UniProt (P05740) Pfam (PF00237) | Saccharomyces cerevisiae BY4741 | L20A,Large ribosomal subunit protein uL22-A,YL17 |
| 8 | H (R) | 60S ribosomal protein L19-A | polymer | 189 | 21762.3 | 1 | UniProt (P0CX82) Pfam (PF01280) | Saccharomyces cerevisiae BY4741 | L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14 |
| 9 | I (U) | 60S ribosomal protein L22-A | polymer | 121 | 13711.4 | 1 | UniProt (P05749) Pfam (PF01776) | Saccharomyces cerevisiae BY4741 | L1c,Large ribosomal subunit protein eL22-A,RP4,YL31 |
| 10 | J (X) | 60S ribosomal protein L25 | polymer | 142 | 15787.6 | 1 | UniProt (P04456) Pfam (PF00276) Pfam (PF03939) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein uL23,RP16L,YL25,YP42' |
| 11 | K (Z) | 60S ribosomal protein L27-A | polymer | 136 | 15568.4 | 1 | UniProt (P0C2H6) Pfam (PF01777) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL27-A |
| 12 | L (b) | Nucleolar GTP-binding protein 1 | polymer | 647 | 74531.2 | 1 | UniProt (Q02892) Pfam (PF17835) Pfam (PF06858) Pfam (PF08155) | Saccharomyces cerevisiae BY4741 | |
| 13 | M (c) | 60S ribosomal protein L30 | polymer | 105 | 11430.4 | 1 | UniProt (P14120) Pfam (PF01248) | Saccharomyces cerevisiae BY4741 | L32,Large ribosomal subunit protein eL30,RP73,YL38 |
| 14 | N (d) | 60S ribosomal protein L31-A | polymer | 113 | 12980.2 | 1 | UniProt (P0C2H8) Pfam (PF01198) | Saccharomyces cerevisiae BY4741 | L34,Large ribosomal subunit protein eL31-A,YL28 |
| 15 | O (g) | 60S ribosomal protein L34-A | polymer | 121 | 13673.2 | 1 | UniProt (P87262) Pfam (PF01199) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL34-A |
| 16 | P (j) | 60S ribosomal protein L37-A | polymer | 88 | 9877.4 | 1 | UniProt (P49166) Pfam (PF01907) | Saccharomyces cerevisiae BY4741 | L43,Large ribosomal subunit protein eL37-A,YL35,YP55 |
| 17 | Q (k) | 60S ribosomal protein L38 | polymer | 78 | 8845.6 | 1 | UniProt (P49167) Pfam (PF01781) | Saccharomyces cerevisiae BY4741 | Large ribosomal subunit protein eL38 |
| 18 | R (m) | Ribosome biogenesis protein ERB1 | polymer | 429 | 48685.1 | 1 | Pfam (PF00400) UniProt (by SIFTS) (Q04660) | Saccharomyces cerevisiae BY4741 | |
| 19 | S (n) | Pescadillo homolog | polymer | 104 | 12445.7 | 1 | Pfam (PF06732) UniProt (by SIFTS) (P53261) | Saccharomyces cerevisiae BY4741 | |
| 20 | T (p) | Ribosome biogenesis protein YTM1 | polymer | 460 | 51440.7 | 1 | UniProt (A6ZPA9) Pfam (PF08154) Pfam (PF00400) UniProt (by SIFTS) (Q12024) | Saccharomyces cerevisiae BY4741 | Microtubule-associated protein YTM1 |
| 21 | U (t) | Ribosome biogenesis protein RLP7 | polymer | 322 | 36621.1 | 1 | UniProt (P40693) Pfam (PF00327) | Saccharomyces cerevisiae BY4741 | Ribosomal protein L7-like |
| 22 | V (u) | Ribosome biogenesis protein RLP24 | polymer | 199 | 24027.7 | 1 | UniProt (Q07915) Pfam (PF01246) | Saccharomyces cerevisiae BY4741 | Ribosomal protein L24-like |
| 23 | W (w) | 27S pre-rRNA (guanosine(2922)-2'-O)-methyltransferase | polymer | 841 | 96656.2 | 1 | UniProt (P25582) Pfam (PF01728) Pfam (PF11861) Pfam (PF07780) | Saccharomyces cerevisiae BY4741 | 2'-O-ribose RNA methyltransferase SPB1,AdoMet-dependent rRNA methyltransferase SPB1,S-adenosyl-L-methionine-dependent methyltransferase,Suppressor of PAB1 protein 1 |
| 24 | X (x) | ATP-dependent rRNA helicase SPB4 | polymer | 606 | 69492.2 | 1 | UniProt (A7A237) Pfam (PF00270) Pfam (PF00271) Pfam (PF13959) UniProt (by SIFTS) (P25808) | Saccharomyces cerevisiae BY4741 | Suppressor of PAB1 protein 4 |
| 25 | Y (g) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) |
Sequence modifications
p: 1 - 460 (UniProt: A6ZPA9)
x: 1 - 606 (UniProt: A7A237)
| PDB | External Database | Details |
|---|---|---|
| Ala 454 | Gly 454 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 405 | Thr 405 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 24 |
| Total formula weight | 1017881.8 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 65.4 | |
| All* | Total formula weight | 1017947.2 |
