7R6W
SARS-CoV-2 spike receptor-binding domain (RBD) in complex with S2X35 Fab and S309 Fab
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | B | Light Chain of Fab domain of monoclonal antibody S309 | polymer | 214 | 23204.7 | 1 | Homo sapiens (Human) | ||
2 | A | Heavy Chain of Fab domain of monoclonal antibody S309 | polymer | 230 | 24573.5 | 1 | Homo sapiens (Human) | ||
3 | L | Light Chain of Fab domain of monoclonal antibody S2X35 | polymer | 219 | 22944.3 | 1 | Homo sapiens (Human) | ||
4 | H | Heavy Chain of Fab domain of monoclonal antibody S2X35 | polymer | 231 | 24780.8 | 1 | Homo sapiens (Human) | ||
5 | R | Spike protein S1 | polymer | 216 | 24442.3 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | |
6 | C | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
7 | L, H, R, B, A | SULFATE ION | non-polymer | 96.1 | 23 | Chemie (SO4) | |||
8 | B, A | GLYCEROL | non-polymer | 92.1 | 3 | Chemie (GOL) | |||
9 | H, R, A | CHLORIDE ION | non-polymer | 35.5 | 3 | Chemie (CL) | |||
10 | R | N-PROPANOL | non-polymer | 60.1 | 2 | Chemie (POL) | |||
11 | water | water | 18.0 | 584 | Chemie (HOH) |
Sequence modifications
R: 328 - 531 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Glu 324 | - | expression tag |
Thr 325 | - | expression tag |
Gly 326 | - | expression tag |
Thr 327 | - | expression tag |
His 532 | - | expression tag |
His 533 | - | expression tag |
His 534 | - | expression tag |
His 535 | - | expression tag |
His 536 | - | expression tag |
His 537 | - | expression tag |
His 538 | - | expression tag |
His 539 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 119945.6 | |
Branched | Number of molecules | 1 |
Total formula weight | 424.4 | |
Non-Polymers* | Number of molecules | 31 |
Total formula weight | 2712.3 | |
All* | Total formula weight | 123082.3 |