7R18
Mink Variant SARS-CoV-2 Spike in Closed conformation
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | Spike glycoprotein | polymer | 1175 | 129525.1 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | D, F, G, I, J... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
| 3 | E, H, K | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 3 | In PDB GlyTouCan (G21290RB) | |||
| 4 | B, A, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 39 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1146 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Met -30 | - | initiating methionine |
| Gly -29 | - | expression tag |
| Ile -28 | - | expression tag |
| Leu -27 | - | expression tag |
| Pro -26 | - | expression tag |
| Ser -25 | - | expression tag |
| Pro -24 | - | expression tag |
| Gly -23 | - | expression tag |
| Met -22 | - | expression tag |
| Pro -21 | - | expression tag |
| Ala -20 | - | expression tag |
| Leu -19 | - | expression tag |
| Leu -18 | - | expression tag |
| Ser -17 | - | expression tag |
| Leu -16 | - | expression tag |
| Val -15 | - | expression tag |
| Ser -14 | - | expression tag |
| Leu -13 | - | expression tag |
| Leu -12 | - | expression tag |
| Ser -11 | - | expression tag |
| Val -10 | - | expression tag |
| Leu -9 | - | expression tag |
| Leu -8 | - | expression tag |
| Met -7 | - | expression tag |
| Gly -6 | - | expression tag |
| Cys -5 | - | expression tag |
| Val -4 | - | expression tag |
| Ala -3 | - | expression tag |
| Glu -2 | - | expression tag |
| Thr -1 | - | expression tag |
| Gly 0 | - | expression tag |
| - | His 69 | deletion |
| - | Val 70 | deletion |
| Phe 453 | Tyr 453 | variant |
| Gly 614 | Asp 614 | variant |
| Ser 682 | Arg 682 | variant |
| Ser 685 | Arg 685 | variant |
| Val 692 | Ile 692 | variant |
| Pro 986 | Lys 986 | engineered mutation |
| Pro 987 | Val 987 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 388575.3 | |
| Branched | Number of molecules | 9 |
| Total formula weight | 4258.0 | |
| Non-Polymers* | Number of molecules | 39 |
| Total formula weight | 8627.1 | |
| All* | Total formula weight | 401460.4 |
