7QUR
SARS-CoV-2 Spike with ethylbenzamide-tri-iodo Siallyllactose, C3 symmetry
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein,Fibritin | polymer | 1259 | 139735.9 | 3 | UniProt (P0DTC2) UniProt (P10104) | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein,Collar protein,Whisker antigen control protein |
| 2 | D, E, F, H, I... (D, E, F, H, I...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 9 | In PDB GlyTouCan (G42666HT) | |||
| 3 | G, K, O (G, K, O) | alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 716.7 | 3 | In PDB GlyTouCan (G63564LA) | |||
| 4 | AA, AB, BB, CB, DB... (A, C, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 36 | Chemie (NAG) | |||
| 5 | BA, GB, QA (A, C, B) | 2,3,5-tris(iodanyl)benzamide | non-polymer | 498.8 | 3 | Chemie (GE9) | |||
| 6 | CA, HB, RA (A, C, B) | N-acetyl-alpha-neuraminic acid | non-polymer | 309.3 | 3 | Chemie (SIA) | |||
| 7 | DA, SA, TA (A, B, C) | LINOLEIC ACID | non-polymer | 280.4 | 3 | Chemie (EIC) | |||
| 8 | IB, JB, KB (A, B, C) | water | water | 18.0 | 282 | Chemie (HOH) |
Sequence modifications
A, B, C: 1 - 1213 (UniProt: P0DTC2)
A, B, C: 1226 - 1252 (UniProt: P10104)
| PDB | External Database | Details |
|---|---|---|
| Ala 685 | Arg 685 | conflict |
| Ser 1214 | - | linker |
| Gly 1215 | - | linker |
| Arg 1216 | - | linker |
| Leu 1217 | - | linker |
| Val 1218 | - | linker |
| Pro 1219 | - | linker |
| Arg 1220 | - | linker |
| Gly 1221 | - | linker |
| Ser 1222 | - | linker |
| Pro 1223 | - | linker |
| Gly 1224 | - | linker |
| Ser 1225 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Leu 1247 | Phe 479 | engineered mutation |
| Gly 1253 | - | expression tag |
| His 1254 | - | expression tag |
| His 1255 | - | expression tag |
| His 1256 | - | expression tag |
| His 1257 | - | expression tag |
| His 1258 | - | expression tag |
| His 1259 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 419207.8 | |
| Branched | Number of molecules | 12 |
| Total formula weight | 5969.7 | |
| Non-Polymers* | Number of molecules | 45 |
| Total formula weight | 11229.1 | |
| All* | Total formula weight | 436406.5 |
