7QTK

SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD down - 1-P2G3 Fab (Local)

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	D	Surface glycoprotein	polymer	1285	142558.1	1	UniProt (A0A8A4XEV3) In PDB	Severe acute respiratory syndrome coronavirus 2
2	B	P2G3 Heavy Chain	polymer	228	24562.5	1		Homo sapiens
3	C	P2G3 Light Chain	polymer	214	23321.8	1		Homo sapiens (human)
4	A	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	1	In PDB GlyTouCan (G42666HT)

Sequence modifications

D: 4 - 1208 (UniProt: A0A8A4XEV3)

PDB	External Database	Details
Val 70	Ala 67	conflict
-	His 69	deletion
-	Val 70	deletion
Ile 96	Thr 95	conflict
-	Asn 208	deletion
Ile 209	Leu 209	conflict
Glu 212	-	insertion
Pro 213	-	insertion
Glu 214	-	insertion
Asp 339	Gly 336	conflict
Leu 371	Ser 368	conflict
Pro 373	Ser 370	conflict
Phe 375	Ser 372	conflict
Asn 417	Lys 414	conflict
Lys 440	Asn 437	conflict
Ser 446	Gly 443	conflict
Asn 477	Ser 474	conflict
Lys 478	Thr 475	conflict
Ala 484	Arg 481	conflict
Arg 493	Gln 490	conflict
Ser 496	Gly 493	conflict
Arg 498	Gln 495	conflict
Tyr 501	Asn 498	conflict
His 505	Tyr 502	conflict
Lys 547	Thr 544	conflict
Tyr 655	His 652	conflict
Lys 679	Asn 676	conflict
His 681	Pro 678	conflict
Gly 682	Arg 679	conflict
Ser 683	Arg 680	conflict
Ser 685	Arg 682	conflict
Lys 764	Asn 761	conflict
Tyr 796	Asp 793	conflict
Lys 856	Asn 853	conflict
His 954	Gln 951	conflict
Lys 969	Asn 966	conflict
Phe 981	Leu 978	conflict
Pro 986	Lys 983	conflict
Pro 987	Val 984	conflict
Gly 1209	-	expression tag
Ser 1210	-	expression tag
Gly 1211	-	expression tag
Tyr 1212	-	expression tag
Ile 1213	-	expression tag
Pro 1214	-	expression tag
Glu 1215	-	expression tag
Ala 1216	-	expression tag
Pro 1217	-	expression tag
Arg 1218	-	expression tag
Asp 1219	-	expression tag
Gly 1220	-	expression tag
Gln 1221	-	expression tag
Ala 1222	-	expression tag
Tyr 1223	-	expression tag
Val 1224	-	expression tag
Arg 1225	-	expression tag
Lys 1226	-	expression tag
Asp 1227	-	expression tag
Gly 1228	-	expression tag
Glu 1229	-	expression tag
Trp 1230	-	expression tag
Val 1231	-	expression tag
Leu 1232	-	expression tag
Leu 1233	-	expression tag
Ser 1234	-	expression tag
Thr 1235	-	expression tag
Phe 1236	-	expression tag
Leu 1237	-	expression tag
Gly 1238	-	expression tag
Arg 1239	-	expression tag
Ser 1240	-	expression tag
Leu 1241	-	expression tag
Glu 1242	-	expression tag
Val 1243	-	expression tag
Leu 1244	-	expression tag
Phe 1245	-	expression tag
Gln 1246	-	expression tag
Gly 1247	-	expression tag
Pro 1248	-	expression tag
Gly 1249	-	expression tag
His 1250	-	expression tag
His 1251	-	expression tag
His 1252	-	expression tag
His 1253	-	expression tag
His 1254	-	expression tag
His 1255	-	expression tag
His 1256	-	expression tag
His 1257	-	expression tag
Ser 1258	-	expression tag
Ala 1259	-	expression tag
Trp 1260	-	expression tag
Ser 1261	-	expression tag
His 1262	-	expression tag
Pro 1263	-	expression tag
Gln 1264	-	expression tag
Phe 1265	-	expression tag
Glu 1266	-	expression tag
Lys 1267	-	expression tag
Gly 1268	-	expression tag
Gly 1269	-	expression tag
Gly 1270	-	expression tag
Ser 1271	-	expression tag
Gly 1272	-	expression tag
Gly 1273	-	expression tag
Gly 1274	-	expression tag
Gly 1275	-	expression tag
Ser 1276	-	expression tag
Gly 1277	-	expression tag
Gly 1278	-	expression tag
Ser 1279	-	expression tag
Ala 1280	-	expression tag
Trp 1281	-	expression tag
Ser 1282	-	expression tag
His 1283	-	expression tag
Pro 1284	-	expression tag
Gln 1285	-	expression tag
Phe 1286	-	expression tag
Glu 1287	-	expression tag
Lys 1288	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	3
	Total formula weight	190442.3
Branched	Number of molecules	1
	Total formula weight	424.4
All*	Total formula weight	190866.7

*Water molecules are not included.