7QO9
SARS-CoV-2 S Omicron Spike B.1.1.529 - RBD and NTD (Local)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | Spike glycoprotein,SARS-CoV-2 S Omicron Spike B.1.1.529 | polymer | 1285 | 142558.1 | 2 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
| 2 | D | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 3 | C, E | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G42666HT) | |||
| 4 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
| 5 | water | water | 18.0 | 3 | Chemie (HOH) |
Sequence modifications
A, B: 1 - 1205 (UniProt: P0DTC2)
A, B: 1206 - 1285 (PDB: 7QO9)
| PDB | External Database | Details |
|---|---|---|
| Val 67 | Ala 67 | conflict |
| - | His 69 | deletion |
| - | Val 70 | deletion |
| Ile 93 | Thr 95 | conflict |
| - | Gly 142 | deletion |
| - | Val 143 | deletion |
| - | Tyr 144 | deletion |
| Asp 140 | Tyr 145 | conflict |
| Ile 206 | - | insertion |
| Val 207 | - | insertion |
| Arg 208 | Asn 211 | conflict |
| Glu 209 | Leu 212 | conflict |
| Pro 210 | Val 213 | conflict |
| Glu 211 | Arg 214 | conflict |
| Asp 336 | Gly 339 | conflict |
| Leu 368 | Ser 371 | conflict |
| Pro 370 | Ser 373 | conflict |
| Phe 372 | Ser 375 | conflict |
| Asn 414 | Lys 417 | conflict |
| Lys 437 | Asn 440 | conflict |
| Ser 443 | Gly 446 | conflict |
| Asn 474 | Ser 477 | conflict |
| Lys 475 | Thr 478 | conflict |
| Ala 481 | Glu 484 | conflict |
| Arg 490 | Gln 493 | conflict |
| Ser 493 | Gly 496 | conflict |
| Arg 495 | Gln 498 | conflict |
| Tyr 498 | Asn 501 | conflict |
| His 502 | Tyr 505 | conflict |
| Lys 544 | Thr 547 | conflict |
| Gly 611 | Asp 614 | conflict |
| Tyr 652 | His 655 | conflict |
| Lys 676 | Asn 679 | conflict |
| His 678 | Pro 681 | conflict |
| Gly 679 | Arg 682 | conflict |
| Ser 680 | Arg 683 | conflict |
| Ser 682 | Arg 685 | conflict |
| Lys 761 | Asn 764 | conflict |
| Tyr 793 | Asp 796 | conflict |
| Lys 853 | Asn 856 | conflict |
| His 951 | Gln 954 | conflict |
| Lys 966 | Asn 969 | conflict |
| Phe 978 | Leu 981 | conflict |
| Pro 983 | Lys 986 | conflict |
| Pro 984 | Val 987 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 285116.2 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 1435.3 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 442.4 | |
| All* | Total formula weight | 286993.9 |
