7QO7
SARS-CoV-2 S Omicron Spike B.1.1.529
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | Surface glycoprotein,Fibritin,SARS-CoV-2 S Omicron Spike B.1.1.529 | polymer | 1285 | 142558.1 | 3 | UniProt (A0A8A4XEV3) UniProt (A0A2Z5WJZ7) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) UniProt (by SIFTS) (P0DTC2) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
| 2 | D | alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G81315DD) | |||
| 3 | E, H, M | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 4 | F, G, I, J, K... | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 18 | In PDB GlyTouCan (G15407YE) | |||
| 5 | Y | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 1 | In PDB GlyTouCan (G21290RB) | |||
| 6 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 14 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1205 (UniProt: A0A8A4XEV3)
A, B, C: 1208 - 1234 (UniProt: A0A2Z5WJZ7)
A, B, C: 1235 - 1285 (PDB: 7QO7)
| PDB | External Database | Details |
|---|---|---|
| Val 67 | Ala 67 | conflict |
| - | His 69 | deletion |
| - | Val 70 | deletion |
| Ile 93 | Thr 95 | conflict |
| Ile 206 | - | insertion |
| Val 207 | - | insertion |
| Arg 208 | Asn 208 | conflict |
| Glu 209 | Leu 209 | conflict |
| Pro 210 | Val 210 | conflict |
| Glu 211 | Arg 211 | conflict |
| Asp 336 | Gly 336 | conflict |
| Leu 368 | Ser 368 | conflict |
| Pro 370 | Ser 370 | conflict |
| Phe 372 | Ser 372 | conflict |
| Asn 414 | Lys 414 | conflict |
| Lys 437 | Asn 437 | conflict |
| Ser 443 | Gly 443 | conflict |
| Asn 474 | Ser 474 | conflict |
| Lys 475 | Thr 475 | conflict |
| Ala 481 | Arg 481 | conflict |
| Arg 490 | Gln 490 | conflict |
| Ser 493 | Gly 493 | conflict |
| Arg 495 | Gln 495 | conflict |
| Tyr 498 | Asn 498 | conflict |
| His 502 | Tyr 502 | conflict |
| Lys 544 | Thr 544 | conflict |
| Tyr 652 | His 652 | conflict |
| Lys 676 | Asn 676 | conflict |
| His 678 | Pro 678 | conflict |
| Gly 679 | Arg 679 | conflict |
| Ser 680 | Arg 680 | conflict |
| Ser 682 | Arg 682 | conflict |
| Lys 761 | Asn 761 | conflict |
| Tyr 793 | Asp 793 | conflict |
| Lys 853 | Asn 853 | conflict |
| His 951 | Gln 951 | conflict |
| Lys 966 | Asn 966 | conflict |
| Phe 978 | Leu 978 | conflict |
| Pro 983 | Lys 983 | conflict |
| Pro 984 | Val 984 | conflict |
| Gly 1206 | - | linker |
| Ser 1207 | - | linker |
A, B, C: 1235 - 1285 (PDB: 7QO7)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 427674.3 | |
| Branched | Number of molecules | 23 |
| Total formula weight | 13150.2 | |
| Non-Polymers* | Number of molecules | 14 |
| Total formula weight | 3096.9 | |
| All* | Total formula weight | 443921.4 |
