7QIX

Specific features and methylation sites of a plant ribosome. 40S body ribosomal subunit.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	2	18S rRNA body	polymer	1807	583160.8	1		Solanum lycopersicum
2	D	60S ribosomal protein L41	polymer	25	3445.4	1	UniProt (K4C3A4) Pfam (PF05162) In PDB	Solanum lycopersicum (tomato)
3	E	40S ribosomal protein SA	polymer	296	32216.3	1	UniProt (A0A3Q7H1U4) Pfam (PF00318) In PDB	Solanum lycopersicum (tomato)
4	F	40S ribosomal protein S3a	polymer	260	29741.5	1	UniProt (A0A3Q7I881) Pfam (PF01015) In PDB	Solanum lycopersicum (tomato)
5	G	40S body ribosomal protein eS4	polymer	264	29959.2	1	Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) UniProt (by SIFTS) (A0A3Q7F1W7) In PDB	Solanum lycopersicum
6	H	40S ribosomal protein S7	polymer	191	22088.5	1	UniProt (A0A3Q7H0E8) Pfam (PF01251) In PDB	Solanum lycopersicum (tomato)
7	I	40S ribosomal protein S8	polymer	220	24918.7	1	UniProt (A0A3Q7HJ03) Pfam (PF01201) In PDB	Solanum lycopersicum (tomato)
8	J	Ribosomal_S17_N domain-containing protein	polymer	159	17740.8	1	UniProt (K4C998) Pfam (PF16205) Pfam (PF00366) UniProt (by SIFTS) (A0A3Q7GZI4) In PDB	Solanum lycopersicum (tomato)
9	K	40S ribosomal protein S17	polymer	144	16266.0	1	UniProt (P49215) Pfam (PF00833) In PDB	Solanum lycopersicum (tomato)
10	L	40S ribosomal protein S21	polymer	82	9163.2	1	UniProt (A0A3Q7G7P4) Pfam (PF01249) In PDB	Solanum lycopersicum (tomato)
11	M	40S body ribosomal protein uS12	polymer	142	15771.6	1	UniProt (K4D3L7) Pfam (PF00164) In PDB	Solanum lycopersicum (tomato)
12	N	40S ribosomal protein S26	polymer	127	14608.2	1	UniProt (A0A3Q7GRY8) Pfam (PF01283) In PDB	Solanum lycopersicum (tomato)
13	O	S5 DRBM domain-containing protein	polymer	280	30630.7	1	UniProt (A0A3Q7G7F0) Pfam (PF00333) Pfam (PF03719) In PDB	Solanum lycopersicum (tomato)
14	P	40S ribosomal protein S6	polymer	249	28384.2	1	UniProt (A0A3Q7HSH1) Pfam (PF01092) In PDB	Solanum lycopersicum (tomato)
15	Q	40S body ribosomal protein uS4	polymer	197	23051.7	1	UniProt (K4ATQ2) Pfam (PF00163) Pfam (PF01479) In PDB	Solanum lycopersicum (tomato)
16	R	30S ribosomal protein S15, chloroplastic	polymer	151	17099.3	1	UniProt (K4CYU9) Pfam (PF08069) Pfam (PF00312) In PDB	Solanum lycopersicum (tomato)
17	S	Ribosomal protein S14	polymer	150	16389.9	1	UniProt (Q38JI8) Pfam (PF00411) UniProt (by SIFTS) (A0A3Q7F2G2) In PDB	Solanum lycopersicum (tomato)	Ribosomal protein S14-like
18	U	40S ribosomal protein S24	polymer	133	15445.3	1	UniProt (A0A3Q7I5D6) Pfam (PF01282) In PDB	Solanum lycopersicum (tomato)
19	V	40S ribosomal protein S27	polymer	86	9620.2	1	UniProt (A0A1U8DQX3) In PDB	Solanum lycopersicum (tomato)
20	W	40S ribosomal protein S30	polymer	62	6953.3	1	UniProt (A0A0V0GRY5) Pfam (PF04758) UniProt (by SIFTS) (A0A3Q7IMP3) In PDB	Solanum lycopersicum (tomato)
21	T	40S ribosomal protein S15a-1	polymer	130	14552.0	1	UniProt (A0A1U7YEG5) Pfam (PF00410) In PDB	Solanum lycopersicum (tomato)	40S ribosomal protein S15a-1 isoform X1
22	X	Ribosomal protein L19	polymer	213	24786.6	1	UniProt (A0A3Q7GQ29) Pfam (PF01280) In PDB	Solanum lycopersicum (tomato)
23	2	POTASSIUM ION	non-polymer		39.1	19	Chemie (K)
24	2, P	MAGNESIUM ION	non-polymer		24.3	60	Chemie (MG)
25	N	ZINC ION	non-polymer		65.4	1	Chemie (ZN)
26		water	water		18.0	570	Chemie (HOH)

Sequence modifications

F: 1 - 260 (UniProt: A0A3Q7I881)

PDB	External Database	Details
Glu 39	Gly 39	conflict
Ala 141	Gly 141	conflict
Val 169	Arg 169	conflict
Arg 173	Val 173	conflict
Val 185	Ala 185	conflict
Phe 205	Tyr 205	conflict

H: 1 - 191 (UniProt: A0A3Q7H0E8)

PDB	External Database	Details
Ala 13	Asp 13	conflict
His 19	Phe 19	conflict
Ser 22	Thr 22	conflict
Gly 24	Ala 24	conflict

I: 1 - 222 (UniProt: A0A3Q7HJ03)

PDB	External Database	Details
Lys 18	Gln 18	conflict
Ser 20	Thr 20	conflict
Phe 66	Tyr 66	conflict
Asn 159	Lys 157	conflict
Ala 162	Lys 160	conflict
Lys 165	Thr 163	conflict
Ala 175	Ser 173	conflict
Leu 180	Tyr 178	conflict

K: 1 - 144 (UniProt: P49215)

PDB	External Database	Details
Glu 87	Asp 87	conflict

L: 1 - 82 (UniProt: A0A3Q7G7P4)

PDB	External Database	Details
Val 44	Arg 44	conflict
Met 68	Leu 68	conflict

S: 1 - 150 (UniProt: Q38JI8)

PDB	External Database	Details
Ias 137	Asp 137	conflict

V: 1 - 86 (UniProt: A0A1U8DQX3)

PDB	External Database	Details
Lys 19	Arg 19	conflict
Ile 76	Thr 76	conflict

T: 1 - 130 (UniProt: A0A1U7YEG5)

PDB	External Database	Details
Ala 20	Arg 20	conflict
Ala 23	Arg 23	conflict
Glu 26	Met 26	conflict
Leu 27	Ile 27	conflict
Asp 49	Glu 49	conflict
Gln 51	Glu 51	conflict
Val 58	Ser 58	conflict
Ala 84	Lys 84	conflict
Thr 85	Glu 85	conflict

X: 1 - 213 (UniProt: A0A3Q7GQ29)

PDB	External Database	Details
Lys 178	Glu 178	conflict
Lys 179	Glu 179	conflict

Contents of the asymmetric unit

Polymers	Number of chains	22
	Total formula weight	985993.0
Non-Polymers*	Number of molecules	80
	Total formula weight	2266.6
All*	Total formula weight	988259.5

*Water molecules are not included.