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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7QIW

Specific features and methylation sites of a plant ribosome. 60S ribosomal subunit.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1D60S ribosomal protein L8polymer26028331.91UniProt (P29766)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Solanum lycopersicum (tomato)L2,Ribosomal protein TL2
2FRibos_L4_asso_C domain-containing proteinpolymer40644852.01UniProt (A0A3Q7HW81)
Pfam (PF00573)
Pfam (PF14374)
In PDB		Solanum lycopersicum (tomato)
3ERibosomal protein L3polymer38944518.21UniProt (Q6SKP4)
Pfam (PF00297)
In PDB		Solanum lycopersicum (tomato)
4GRibosomal_L18_c domain-containing proteinpolymer30134667.31UniProt (A0A3Q7H274)
Pfam (PF17144)
Pfam (PF14204)
In PDB		Solanum lycopersicum (tomato)
5HRibosomal_L6e_N domain-containing proteinpolymer22925621.51UniProt (A0A3Q7GMA5)
Pfam (PF03868)
Pfam (PF01159)
In PDB		Solanum lycopersicum (tomato)
6IThaliana 60S ribosomal protein L7polymer24228058.01UniProt (M1BRF8)
Pfam (PF08079)
Pfam (PF00327)
In PDB		Solanum lycopersicum (tomato)
7JRibosomal_L7Ae domain-containing proteinpolymer25829362.11UniProt (A0A3Q7GV73)
Pfam (PF01248)
In PDB		Solanum lycopersicum (tomato)
8K60S ribosomal protein uL6polymer19422004.61UniProt (A0A3Q7JDZ0)
Pfam (PF00347)
In PDB		Solanum lycopersicum (tomato)
9L60S ribosomal protein L10polymer22024913.31UniProt (Q3SC85)
Pfam (PF00252)
In PDB		Solanum lycopersicum (tomato)
10M60S ribosomal protein uL5polymer18120826.21UniProt (K4CG62)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Solanum lycopersicum (tomato)
11N60S ribosomal protein L13polymer20623620.61UniProt (A0A3Q7JCM5)
Pfam (PF01294)
In PDB		Solanum lycopersicum (tomato)
12ORibosomal_L14e domain-containing proteinpolymer13315400.41UniProt (A0A3Q7J0J5)
Pfam (PF01929)
In PDB		Solanum lycopersicum (tomato)
13PRibosomal protein L15polymer20424233.31UniProt (A0A3Q7HQH0)
Pfam (PF00827)
In PDB		Solanum lycopersicum (tomato)
14Q60S ribosomal protein uL13polymer20623613.21UniProt (A0A6N2B4A3)
Pfam (PF00572)
In PDB		Solanum lycopersicum (tomato)
15R50S ribosomal protein L22, chloroplasticpolymer17319785.71UniProt (A0A3Q7FNQ5)
Pfam (PF00237)
In PDB		Solanum lycopersicum (tomato)
16SRibosomal_L18e/L15P domain-containing proteinpolymer18720764.51UniProt (A0A3Q7I5W4)
Pfam (PF17135)
In PDB		Solanum lycopersicum (tomato)
17TRibosomal protein L19polymer21324786.61UniProt (A0A3Q7GQ29)
Pfam (PF01280)
In PDB		Solanum lycopersicum (tomato)
18U60S ribosomal protein L18apolymer17821476.31UniProt (A0A3Q7IGB1)
Pfam (PF01775)
In PDB		Solanum lycopersicum (tomato)
19V60S ribosomal protein eL21polymer16418715.81UniProt (A0A3Q7IJQ0)
Pfam (PF01157)
In PDB		Solanum lycopersicum (tomato)
20W60S ribosomal protein eL22polymer12413996.11UniProt (A0A3Q7I7E8)
Pfam (PF01776)
In PDB		Solanum lycopersicum (tomato)
21X60S ribosomal protein uL14polymer14015040.91UniProt (K4CUW3)
Pfam (PF00238)
In PDB		Solanum lycopersicum (tomato)
22YTRASH domain-containing proteinpolymer16518712.11UniProt (A0A3Q7IN69)
Pfam (PF01246)
In PDB		Solanum lycopersicum (tomato)
23ZRibosomal_L23eN domain-containing proteinpolymer15417427.71UniProt (A0A3Q7INK3)
Pfam (PF03939)
Pfam (PF00276)
In PDB		Solanum lycopersicum (tomato)
24aKOW domain-containing proteinpolymer14616750.51UniProt (A0A3Q7FBC6)
Pfam (PF16906)
Pfam (PF00467)
In PDB		Solanum lycopersicum (tomato)
25b60S ribosomal protein L27polymer13515698.61UniProt (A0A3Q7GZ83)
Pfam (PF01777)
In PDB		Solanum lycopersicum (tomato)
26cPutative 60S ribosomal protein L27a-3-likepolymer14816479.41UniProt (A0A0V0H357)
Pfam (PF00828)
In PDB		Solanum lycopersicum (tomato)
27d60S ribosomal protein L29polymer606989.91UniProt (A0A3Q7GK12)
Pfam (PF01779)
In PDB		Solanum lycopersicum (tomato)
28eRibosomal_L7Ae domain-containing proteinpolymer11212367.51UniProt (A0A3Q7E9D6)
Pfam (PF01248)
In PDB		Solanum lycopersicum (tomato)
29f60S ribosomal protein eL31polymer12013890.21UniProt (A0A3Q7JRW8)
Pfam (PF01198)
In PDB		Solanum lycopersicum (tomato)
30g60S ribosomal protein eL32polymer13315673.51UniProt (A0A3Q7F2B5)
Pfam (PF01655)
In PDB		Solanum lycopersicum (tomato)
31h60S ribosomal protein eL33polymer11212952.21UniProt (A0A3Q7FPS6)
Pfam (PF01247)
In PDB		Solanum lycopersicum (tomato)
32i60S ribosomal protein eL34polymer12013815.41UniProt (A0A3Q7GDM4)
Pfam (PF01199)
In PDB		Solanum lycopersicum (tomato)
33jSimilar to 60S ribosomal protein L35polymer12314324.41UniProt (Q53U38)
Pfam (PF00831)
In PDB		Solanum lycopersicum (tomato)
34k60S ribosomal protein L36polymer11012406.91UniProt (A0A3Q7GUG2)
Pfam (PF01158)
In PDB		Solanum lycopersicum (tomato)
35lRibosomal protein L37polymer9510809.61UniProt (A0A3Q7FV98)
Pfam (PF01907)
In PDB		Solanum lycopersicum (tomato)
36m60S ribosomal protein L38polymer698101.71UniProt (P46291)
Pfam (PF01781)
In PDB		Solanum lycopersicum (tomato)
37n60S ribosomal protein eL39polymer516489.81UniProt (A0A3Q7J415)
Pfam (PF00832)
In PDB		Solanum lycopersicum (tomato)
38oUbiquitin-like domain-containing proteinpolymer12814745.41UniProt (K4B017)
Pfam (PF00240)
Pfam (PF01020)
In PDB		Solanum lycopersicum (tomato)
39p60S ribosomal protein eL42polymer10512037.31UniProt (A0A3Q7H1I0)
Pfam (PF00935)
In PDB		Solanum lycopersicum (tomato)
40q60S ribosomal protein eL43polymer9210280.11UniProt (K4CND1)
Pfam (PF01780)
In PDB		Solanum lycopersicum (tomato)
41rRibosomal_L28e domain-containing proteinpolymer14316018.61UniProt (A0A3Q7FVJ9)
Pfam (PF01778)
In PDB		Solanum lycopersicum (tomato)
42stRNApolymer2589.41Solanum lycopersicum (tomato)
43225S rRNApolymer33911098453.01GenBank (2090998066)Solanum lycopersicum (tomato)
4455S rRNApolymer12038634.91GenBank (19159)Solanum lycopersicum (tomato)
4585.8S rRNApolymer16553173.61GenBank (1418500722)Solanum lycopersicum (tomato)
46N, 2, i, p, D...POTASSIUM IONnon-polymer39.190Chemie (K)
472, 8, N, R, T...MAGNESIUM IONnon-polymer24.3276Chemie (MG)
48l, o, p, qZINC IONnon-polymer65.44Chemie (ZN)
492SPERMINEnon-polymer202.33Chemie (SPM)
502SPERMIDINEnon-polymer145.21Chemie (SPD)
51waterwater18.03935Chemie (HOH)
Sequence modifications
F: 1 - 406 (UniProt: A0A3Q7HW81)
PDBExternal DatabaseDetails
Val 162Ile 162conflict
Asn 170Val 170conflict
Gln 277Leu 277conflict
Ala 366Gln 366conflict
G: 1 - 301 (UniProt: A0A3Q7H274)
PDBExternal DatabaseDetails
Phe 51Leu 51conflict
His 85Arg 85conflict
J: 1 - 258 (UniProt: A0A3Q7GV73)
PDBExternal DatabaseDetails
Ser 10Ala 114conflict
Ala 18Ser 122conflict
Leu 21Val 125conflict
K: 1 - 194 (UniProt: A0A3Q7JDZ0)
PDBExternal DatabaseDetails
Gln 24Leu 24conflict
Val 27Ile 27conflict
Gly 65Ser 65conflict
Thr 69Ala 69conflict
Ser 109Thr 109conflict
N: 1 - 206 (UniProt: A0A3Q7JCM5)
PDBExternal DatabaseDetails
Arg 128His 128conflict
P: 1 - 204 (UniProt: A0A3Q7HQH0)
PDBExternal DatabaseDetails
Val 135Ile 135conflict
Gln 137Ser 137conflict
R: 1 - 173 (UniProt: A0A3Q7FNQ5)
PDBExternal DatabaseDetails
Ser 46Arg 46conflict
S: 1 - 187 (UniProt: A0A3Q7I5W4)
PDBExternal DatabaseDetails
Thr 17Ile 17conflict
Ala 37Ser 37conflict
Pro 60Ala 60conflict
Ile 68Val 68conflict
Ala 71Met 71conflict
Gly 75Glu 75conflict
Val 79Ala 79conflict
Leu 81Val 81conflict
Cys 100Thr 100conflict
Lys 103Arg 103conflict
Leu 136Val 136conflict
Pro 153Lys 153conflict
T: 1 - 213 (UniProt: A0A3Q7GQ29)
PDBExternal DatabaseDetails
Lys 178Glu 178conflict
Lys 179Glu 179conflict
U: 1 - 178 (UniProt: A0A3Q7IGB1)
PDBExternal DatabaseDetails
Thr 73Lys 73conflict
Ala 104Gly 104conflict
Y: 1 - 164 (UniProt: A0A3Q7IN69)
PDBExternal DatabaseDetails
Met 0-initiating methionine
Z: 1 - 154 (UniProt: A0A3Q7INK3)
PDBExternal DatabaseDetails
Ser 55Asn 55conflict
Val 61Ile 61conflict
Ala 73Gln 73conflict
Ile 74Val 74conflict
Tyr 77Cys 77conflict
Lys 101His 101conflict
a: 1 - 146 (UniProt: A0A3Q7FBC6)
PDBExternal DatabaseDetails
Val 25Leu 25conflict
Asn 43Ser 43conflict
Asn 99His 99conflict
Val 105Ile 105conflict
b: 1 - 135 (UniProt: A0A3Q7GZ83)
PDBExternal DatabaseDetails
Phe 117Leu 117conflict
c: 1 - 148 (UniProt: A0A0V0H357)
PDBExternal DatabaseDetails
Val 82Leu 82conflict
Ile 129Val 129conflict
e: 1 - 112 (UniProt: A0A3Q7E9D6)
PDBExternal DatabaseDetails
Gly 43Ala 43conflict
Leu 55Ile 55conflict
Tyr 89Phe 89conflict
Ser 92Cys 92conflict
f: 1 - 120 (UniProt: A0A3Q7JRW8)
PDBExternal DatabaseDetails
Val 76Ile 76conflict
j: 1 - 123 (UniProt: Q53U38)
PDBExternal DatabaseDetails
Ala 67Leu 67conflict
Val 72Ala 72conflict
Ser 100Ala 100conflict
Met 112Leu 112conflict
k: 1 - 110 (UniProt: A0A3Q7GUG2)
PDBExternal DatabaseDetails
Lys 88Arg 124conflict
l: 1 - 95 (UniProt: A0A3Q7FV98)
PDBExternal DatabaseDetails
Leu 44Lys 44conflict
o: 1 - 128 (UniProt: K4B017)
PDBExternal DatabaseDetails
Arg 113Lys 113conflict
p: 1 - 105 (UniProt: A0A3Q7H1I0)
PDBExternal DatabaseDetails
Gly 76Ser 76conflict
Val 80Met 80conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains45
Total formula weight1981410.6
Non-Polymers*Number of molecules374
Total formula weight11240.9
All*Total formula weight1992651.5
*Water molecules are not included.

221051

PDB entries from 2024-06-12

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