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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7QGR

Structure of the SmrB-bound E. coli disome - collided 70S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(O)		5S rRNApolymer12038790.11GenBank (CP035706.1)Escherichia coli
2B
(P)		50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)		Escherichia coliribosomal protein uL2
3C
(Q)		50S ribosomal protein L3polymer20922277.51UniProt (A0A829E125)
Pfam (PF00297)
UniProt (by SIFTS) (P60438)		Escherichia coli
4D
(R)		50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)		Escherichia coliribosomal protein uL4
5E
(S)		50S ribosomal protein L5polymer17920333.61UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)		Escherichia coliribosomal protein uL5
6F
(T)		50S ribosomal protein L6polymer17718932.81UniProt (P0AG55)
Pfam (PF00347)		Escherichia coliribosomal protein uL6
7G
(V)		50S ribosomal protein L11polymer14214894.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)		Escherichia coliribosomal protein uL11
8H
(W)		50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)		Escherichia coliribosomal protein uL13
9I
(X)		50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)		Escherichia coliribosomal protein uL14
10J
(Y)		50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)		Escherichia coliribosomal protein uL15
11K
(Z)		50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)		Escherichia coliribosomal protein uL16
12L
(a)		50S ribosomal protein L17polymer12714335.61UniProt (A0A829CNM8)
Pfam (PF01196)
UniProt (by SIFTS) (P0AG44)		Escherichia coli
13M
(b)		50S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)		Escherichia coliribosomal protein uL18
14N
(c)		50S ribosomal protein L19polymer11513159.31UniProt (P0A7K6)
Pfam (PF01245)		Escherichia coliribosomal protein bL19
15O
(d)		50S ribosomal protein L20polymer11813528.01UniProt (P0A7L3)
Pfam (PF00453)		Escherichia coliribosomal protein bL20
16P
(e)		50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)		Escherichia coliribosomal protein bL21
17Q
(f)		50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)		Escherichia coliribosomal protein uL22
18R
(g)		50S ribosomal protein L23polymer10011252.21UniProt (A0A829CFV1)
Pfam (PF00276)
UniProt (by SIFTS) (P0ADZ0)		Escherichia coli
19S
(h)		50S ribosomal protein L24polymer10411339.31UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)		Escherichia coliribosomal protein uL24
20T
(i)		50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)		Escherichia coliribosomal protein bL25
21U
(j)		50S ribosomal protein L27polymer859146.51UniProt (V0A6S2)
Pfam (PF01016)
UniProt (by SIFTS) (P0A7L8)		Escherichia coli
22V
(k)		50S ribosomal protein L28polymer789027.61UniProt (P0A7M2)
Pfam (PF00830)		Escherichia coliribosomal protein bL28
23W
(l)		50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)		Escherichia coliribosomal protein uL29
24X
(m)		50S ribosomal protein L30polymer596554.81UniProt (P0AG51)
Pfam (PF00327)		Escherichia coliribosomal protein uL30
25Y
(n)		50S ribosomal protein L32polymer576463.41UniProt (P0A7N4)
Pfam (PF01783)		Escherichia coliribosomal protein bL32
26Z
(o)		50S ribosomal protein L33polymer556388.61UniProt (P0A7N9)
Pfam (PF00471)		Escherichia coliribosomal protein bL33
27AA
(p)		50S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)		Escherichia coliribosomal protein bL34
28BA
(q)		50S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)		Escherichia coliRibosomal protein A, ribosomal protein bL35
29CA
(r)		50S ribosomal protein L36polymer556315.61Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)		Escherichia coli
30DA
(N)		23S rRNApolymer2903941306.21GenBank (170787319)Escherichia coli
31EA
(L)		50S ribosomal protein L31polymer707917.11UniProt (A0A1X3HZV8)
Pfam (PF01197)
UniProt (by SIFTS) (P0A7M9)		Escherichia coli
32FA
(C)		50S ribosomal protein L1polymer22323735.51UniProt (A0A4Y8DMK0)
Pfam (PF00687)
UniProt (by SIFTS) (P0A7L0)		Escherichia coli
33GA
(U)		50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)		Escherichia coliribosomal protein bL9
34HA
(M)		P-site tRNApolymer7524060.31GenBank (1207385735)Escherichia coli
35IA
(x)		mRNApolymer692221443.11Vibrio alginolyticus
36JA
(0)		16S rRNApolymer1539498725.41GenBank (1359176725)Escherichia coli
37KA
(1)		30S ribosomal protein S2polymer23926581.51UniProt (P0A7V0)
Pfam (PF00318)		Escherichia coliSmall ribosomal subunit protein uS2
38LA
(2)		30S ribosomal protein S3polymer21824293.21UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)		Escherichia coliSmall ribosomal subunit protein uS3
39MA
(3)		30S ribosomal protein S4polymer20623514.21UniProt (C3SR62)
Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (P0A7V8)		Escherichia coli
40NA
(4)		30S ribosomal protein S5polymer16217120.81UniProt (A0A377C6M5)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (P0A7W1)		Escherichia coli
41OA
(5)		30S ribosomal protein S6, non-modified isoformpolymer13115201.01UniProt (P02358)
Pfam (PF01250)		Escherichia coli
42PA
(6)		30S ribosomal protein S7polymer15216992.71UniProt (P02359)
Pfam (PF00177)		Escherichia coliSmall ribosomal subunit protein uS7
43QA
(7)		30S ribosomal protein S8polymer13014146.61UniProt (C3SR12)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)		Escherichia coli
44RA
(8)		30S ribosomal protein S9polymer13014872.21UniProt (A0A1Z3UZ18)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)		Escherichia coli
45SA
(9)		30S ribosomal protein S10polymer10311755.61UniProt (P0A7R5)
Pfam (PF00338)		Escherichia coliSmall ribosomal subunit protein uS10,Transcription termination/antitermination protein NusE
46TA
(A)		30S ribosomal protein S11polymer12913844.91UniProt (A0A829AF87)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)		Escherichia coli
47UA
(B)		30S ribosomal protein S12polymer12413768.21UniProt (C3SQR7)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)		Escherichia coli
48VA
(D)		30S ribosomal protein S13polymer11813096.41UniProt (A0A7U9IV78)
Pfam (PF00416)
UniProt (by SIFTS) (P0A7S9)		Escherichia coli
49WA
(E)		30S ribosomal protein S14polymer10111562.51UniProt (A0A090BZT4)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)		Escherichia coli
50XA
(F)		30S ribosomal protein S15polymer8910290.81UniProt (P0ADZ4)
Pfam (PF00312)		Escherichia coliSmall ribosomal subunit protein uS15
51YA
(G)		30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)		Escherichia coliSmall ribosomal subunit protein bS16
52ZA
(H)		30S ribosomal protein S17polymer849694.51UniProt (A0A829A8C6)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)		Escherichia coli
53AB
(I)		30S ribosomal protein S18polymer759006.51UniProt (A0A376I7P4)Escherichia coli
54BB
(J)		30S ribosomal protein S19polymer9210586.51UniProt (S1EA57)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)		Escherichia coli
55CB
(K)		30S ribosomal protein S20polymer879690.41UniProt (P0A7U7)
Pfam (PF01649)		Escherichia coliSmall ribosomal subunit protein bS20
56DB
(s)		30S ribosomal protein S21polymer718524.01UniProt (P68679)
Pfam (PF01165)		Escherichia coliSmall ribosomal subunit protein bS21
57EB
(t)		30S ribosomal protein S1polymer55761224.91UniProt (A0A829CYC5)
Pfam (PF00575)
UniProt (by SIFTS) (P0AG67)		Escherichia coli
58FB
(u)		A-site tRNApolymer7323546.01Escherichia coli
59GB
(v)		UPF0115 protein YfcNpolymer18220841.21UniProt (Q6KCY1)
Pfam (PF01713)
UniProt (by SIFTS) (P0A8B2)		Escherichia coli
60HB, IB
(u)		MAGNESIUM IONnon-polymer24.32Chemie (MG)
61JB
(u)		POTASSIUM IONnon-polymer39.11Chemie (K)
62KB
(u)		waterwater18.09Chemie (HOH)
Sequence modifications
a: 1 - 127 (UniProt: A0A829CNM8)
PDBExternal DatabaseDetails
Ala 123Glu 123conflict
g: 1 - 100 (UniProt: A0A829CFV1)
PDBExternal DatabaseDetails
Ser 98Gly 98conflict
L: 1 - 70 (UniProt: A0A1X3HZV8)
PDBExternal DatabaseDetails
Ser 68Gly 68conflict
4: 4 - 165 (UniProt: A0A377C6M5)
PDBExternal DatabaseDetails
Met 4Ile 4conflict
5: 1 - 131 (UniProt: P02358)
PDBExternal DatabaseDetails
Ser 101Pro 101conflict
8: 1 - 130 (UniProt: A0A1Z3UZ18)
PDBExternal DatabaseDetails
Asp 3Glu 3conflict
A: 1 - 129 (UniProt: A0A829AF87)
PDBExternal DatabaseDetails
Ala 5Pro 5conflict
D: 1 - 118 (UniProt: A0A7U9IV78)
PDBExternal DatabaseDetails
Val 1Met 1conflict
E: 1 - 101 (UniProt: A0A090BZT4)
PDBExternal DatabaseDetails
Ala 40Glu 40conflict
H: 1 - 84 (UniProt: A0A829A8C6)
PDBExternal DatabaseDetails
Ala 2Thr 2conflict
I: 1 - 75 (UniProt: A0A376I7P4)
PDBExternal DatabaseDetails
Thr 15Ala 15conflict
Ala 58Cys 58conflict
J: 1 - 92 (UniProt: S1EA57)
PDBExternal DatabaseDetails
Tyr 82Gly 82conflict
Tyr 83His 83conflict
K: 1 - 87 (UniProt: P0A7U7)
PDBExternal DatabaseDetails
Leu 1Met 1conflict
t: 1 - 557 (UniProt: A0A829CYC5)
PDBExternal DatabaseDetails
Val 241Ile 241conflict
v: 1 - 182 (UniProt: Q6KCY1)
PDBExternal DatabaseDetails
Ala 99Asp 99conflict
Ala 101His 101conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains59
Total formula weight2524404.6
Non-Polymers*Number of molecules3
Total formula weight87.7
All*Total formula weight2524492.3
*Water molecules are not included.

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PDB entries from 2025-06-11

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