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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7QGN

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA-site tRNApolymer7323546.01Escherichia coli
2BUPF0115 protein YfcNpolymer18320938.31UniProt (Q6KCY1)
Pfam (PF01713)
In PDB		Escherichia coli
3sVemP nascent chainpolymer17920531.11Vibrio alginolyticus
4MP-site tRNApolymer7524060.31GenBank (1207385735)Escherichia coli
5O5S rRNApolymer12038790.11GenBank (CP035706.1)Escherichia coli
6P50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliribosomal protein uL2
7Q50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliribosomal protein uL3
8R50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coliribosomal protein uL4
9S50S ribosomal protein L5polymer17920333.61UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coliribosomal protein uL5
10T50S ribosomal protein L6polymer17718932.81UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coliribosomal protein uL6
11U50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coliribosomal protein bL9
12V50S ribosomal protein L11polymer14214894.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coliribosomal protein uL11
13W50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coliribosomal protein uL13
14X50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coliribosomal protein uL14
15Y50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coliribosomal protein uL15
16Z50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliribosomal protein uL16
17aRibosomal protein L17polymer12714335.61UniProt (A0A829CNM8)
In PDB		Escherichia coli
18b50S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coliribosomal protein uL18
19c50S ribosomal protein L19polymer11513159.31UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coliribosomal protein bL19
20d50S ribosomal protein L20polymer11813528.01UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coliribosomal protein bL20
21e50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coliribosomal protein bL21
22f50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coliribosomal protein uL22
23g50S ribosomal protein L23polymer10011252.21UniProt (A0A829CFV1)
In PDB		Escherichia coli
24h50S ribosomal protein L24polymer10411339.31UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coliribosomal protein uL24
25i50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coliribosomal protein bL25
26j50S ribosomal protein L27polymer859146.51UniProt (V0A6S2)
In PDB		Escherichia coli
27k50S ribosomal protein L28polymer789027.61UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coliribosomal protein bL28
28l50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coliribosomal protein uL29
29m50S ribosomal protein L30polymer596554.81UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coliribosomal protein uL30
30n50S ribosomal protein L32polymer576463.41UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coliribosomal protein bL32
31o50S ribosomal protein L33polymer556388.61UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coliribosomal protein bL33
32p50S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coliribosomal protein bL34
33q50S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliRibosomal protein A, ribosomal protein bL35
34r50S ribosomal protein L36polymer556315.61Escherichia coli
35N23S rRNApolymer2903941306.21GenBank (937526251)Escherichia coli
36L50S ribosomal protein L31polymer707917.11UniProt (J7R8B2)
In PDB		Escherichia coli
37C50S ribosomal protein L1polymer22323735.51UniProt (A0A4Y8DMK0)
In PDB		Escherichia coli
38016S rRNApolymer1539498725.41GenBank (1359176725)Escherichia coli
39130S ribosomal protein S2polymer23926581.51UniProt (C3TPN2)
Pfam (PF00318)
In PDB		Escherichia coli
40230S ribosomal protein S3polymer21824293.21UniProt (A0A376HTV6)
In PDB		Escherichia coli
41330S ribosomal protein S4polymer20623514.21UniProt (C3SR62)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli
42430S ribosomal protein S5polymer16217120.81UniProt (A0A377C6M5)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli
43530S ribosomal protein S6polymer13115201.01UniProt (C3SFQ7)
Pfam (PF01250)
In PDB		Escherichia coli K-12
446Ribosomal protein S7polymer15617618.41UniProt (A0A829CQ35)
In PDB		Escherichia coli
45730S ribosomal protein S8polymer13014146.61UniProt (C3SR12)
Pfam (PF00410)
In PDB		Escherichia coli
46830S ribosomal protein S9polymer13014872.21UniProt (A0A1Z3UZ18)
In PDB		Escherichia coli
47930S ribosomal protein S10polymer10311755.61UniProt (C3SQT7)
Pfam (PF00338)
In PDB		Escherichia coli
48D30S ribosomal protein S11polymer12913844.91UniProt (A0A829AF87)
In PDB		Escherichia coli
49E30S ribosomal protein S12polymer12413768.21UniProt (C3SQR7)
Pfam (PF00164)
In PDB		Escherichia coli
50F30S ribosomal protein S13polymer11813096.41UniProt (A0A7U9IV78)
Pfam (PF00416)
In PDB		Escherichia coli
51G30S ribosomal protein S14polymer10111562.51UniProt (A0A090BZT4)
Pfam (PF00253)
In PDB		Escherichia coli
52H30S ribosomal protein S15polymer8910290.81UniProt (C3SSQ7)
Pfam (PF00312)
In PDB		Escherichia coli
53I30S ribosomal protein S16polymer829207.61UniProt (C3SYP2)
Pfam (PF00886)
In PDB		Escherichia coli UMEA 3162-1
54J30S ribosomal protein S17polymer849694.51UniProt (A0A829A8C6)
In PDB		Escherichia coli
55K30S ribosomal protein S18polymer759006.51Escherichia coli
56t30S ribosomal protein S19polymer9210586.51UniProt (S1EA57)
In PDB		Escherichia coli
57u30S ribosomal protein S20polymer879690.41UniProt (C3TRH7)
Pfam (PF01649)
In PDB		Escherichia coli
58v30S ribosomal protein S21polymer8810257.91Escherichia coli
59AMAGNESIUM IONnon-polymer24.32Chemie (MG)
60APOTASSIUM IONnon-polymer39.11Chemie (K)
61waterwater18.09Chemie (HOH)
Sequence modifications
B: 1 - 183 (UniProt: Q6KCY1)
PDBExternal DatabaseDetails
Ala 99Asp 99variant
Ala 101His 101variant
a: 1 - 127 (UniProt: A0A829CNM8)
PDBExternal DatabaseDetails
Ala 123Glu 123variant
g: 1 - 100 (UniProt: A0A829CFV1)
PDBExternal DatabaseDetails
Ser 98Gly 98variant
L: 1 - 70 (UniProt: J7R8B2)
PDBExternal DatabaseDetails
Ser 68Gly 68variant
4: 4 - 165 (UniProt: A0A377C6M5)
PDBExternal DatabaseDetails
Met 4Ile 4variant
5: 1 - 131 (UniProt: C3SFQ7)
PDBExternal DatabaseDetails
Ser 101Pro 101variant
6: 1 - 156 (UniProt: A0A829CQ35)
PDBExternal DatabaseDetails
His 78Arg 78variant
8: 1 - 130 (UniProt: A0A1Z3UZ18)
PDBExternal DatabaseDetails
Asp 3Glu 3variant
D: 1 - 129 (UniProt: A0A829AF87)
PDBExternal DatabaseDetails
Ala 5Pro 5variant
F: 1 - 118 (UniProt: A0A7U9IV78)
PDBExternal DatabaseDetails
Val 1Met 1variant
G: 1 - 101 (UniProt: A0A090BZT4)
PDBExternal DatabaseDetails
Ala 40Glu 40variant
J: 1 - 84 (UniProt: A0A829A8C6)
PDBExternal DatabaseDetails
Ala 2Thr 2variant
t: 1 - 92 (UniProt: S1EA57)
PDBExternal DatabaseDetails
Tyr 82Gly 82variant
Tyr 83His 83variant
u: 1 - 87 (UniProt: C3TRH7)
PDBExternal DatabaseDetails
Leu 1Met 1variant
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains58
Total formula weight2264724.4
Non-Polymers*Number of molecules3
Total formula weight87.7
All*Total formula weight2264812.1
*Water molecules are not included.

222624

PDB entries from 2024-07-17

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