Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

7QGN

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (A)	A-site tRNA	polymer	73	23546.0	1		Escherichia coli
2	B (B)	UPF0115 protein YfcN	polymer	183	20938.3	1	UniProt (Q6KCY1) Pfam (PF01713) UniProt (by SIFTS) (P0A8B2)	Escherichia coli
3	C (s)	VemP nascent chain	polymer	179	20531.1	1		Vibrio alginolyticus
4	D (M)	P-site tRNA	polymer	75	24060.3	1	GenBank (1207385735)	Escherichia coli
5	E (O)	5S rRNA	polymer	120	38790.1	1	GenBank (CP035706.1)	Escherichia coli
6	F (P)	50S ribosomal protein L2	polymer	273	29923.6	1	UniProt (P60422) Pfam (PF00181) Pfam (PF03947)	Escherichia coli	ribosomal protein uL2
7	G (Q)	50S ribosomal protein L3	polymer	209	22277.5	1	UniProt (P60438) Pfam (PF00297)	Escherichia coli	ribosomal protein uL3
8	H (R)	50S ribosomal protein L4	polymer	201	22121.6	1	UniProt (P60723) Pfam (PF00573)	Escherichia coli	ribosomal protein uL4
9	I (S)	50S ribosomal protein L5	polymer	179	20333.6	1	UniProt (P62399) Pfam (PF00281) Pfam (PF00673)	Escherichia coli	ribosomal protein uL5
10	J (T)	50S ribosomal protein L6	polymer	177	18932.8	1	UniProt (P0AG55) Pfam (PF00347)	Escherichia coli	ribosomal protein uL6
11	K (U)	50S ribosomal protein L9	polymer	149	15789.0	1	UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948)	Escherichia coli	ribosomal protein bL9
12	L (V)	50S ribosomal protein L11	polymer	142	14894.4	1	UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298)	Escherichia coli	ribosomal protein uL11
13	M (W)	50S ribosomal protein L13	polymer	142	16050.6	1	UniProt (P0AA10) Pfam (PF00572)	Escherichia coli	ribosomal protein uL13
14	N (X)	50S ribosomal protein L14	polymer	123	13565.1	1	UniProt (P0ADY3) Pfam (PF00238)	Escherichia coli	ribosomal protein uL14
15	O (Y)	50S ribosomal protein L15	polymer	144	15008.5	1	UniProt (P02413) Pfam (PF00828)	Escherichia coli	ribosomal protein uL15
16	P (Z)	50S ribosomal protein L16	polymer	136	15312.3	1	UniProt (P0ADY7) Pfam (PF00252)	Escherichia coli	ribosomal protein uL16
17	Q (a)	Ribosomal protein L17	polymer	127	14335.6	1	UniProt (A0A829CNM8) Pfam (PF01196) UniProt (by SIFTS) (P0AG44)	Escherichia coli
18	R (b)	50S ribosomal protein L18	polymer	117	12794.7	1	UniProt (P0C018) Pfam (PF00861)	Escherichia coli	ribosomal protein uL18
19	S (c)	50S ribosomal protein L19	polymer	115	13159.3	1	UniProt (P0A7K6) Pfam (PF01245)	Escherichia coli	ribosomal protein bL19
20	T (d)	50S ribosomal protein L20	polymer	118	13528.0	1	UniProt (P0A7L3) Pfam (PF00453)	Escherichia coli	ribosomal protein bL20
21	U (e)	50S ribosomal protein L21	polymer	103	11586.4	1	UniProt (P0AG48) Pfam (PF00829)	Escherichia coli	ribosomal protein bL21
22	V (f)	50S ribosomal protein L22	polymer	110	12253.4	1	UniProt (P61175) Pfam (PF00237)	Escherichia coli	ribosomal protein uL22
23	W (g)	50S ribosomal protein L23	polymer	100	11252.2	1	UniProt (A0A829CFV1) Pfam (PF00276) UniProt (by SIFTS) (P0ADZ0)	Escherichia coli
24	X (h)	50S ribosomal protein L24	polymer	104	11339.3	1	UniProt (P60624) Pfam (PF00467) Pfam (PF17136)	Escherichia coli	ribosomal protein uL24
25	Y (i)	50S ribosomal protein L25	polymer	94	10713.5	1	UniProt (P68919) Pfam (PF01386)	Escherichia coli	ribosomal protein bL25
26	Z (j)	50S ribosomal protein L27	polymer	85	9146.5	1	UniProt (V0A6S2) Pfam (PF01016) UniProt (by SIFTS) (P0A7L8)	Escherichia coli
27	AA (k)	50S ribosomal protein L28	polymer	78	9027.6	1	UniProt (P0A7M2) Pfam (PF00830)	Escherichia coli	ribosomal protein bL28
28	BA (l)	50S ribosomal protein L29	polymer	63	7286.5	1	UniProt (P0A7M6) Pfam (PF00831)	Escherichia coli	ribosomal protein uL29
29	CA (m)	50S ribosomal protein L30	polymer	59	6554.8	1	UniProt (P0AG51) Pfam (PF00327)	Escherichia coli	ribosomal protein uL30
30	DA (n)	50S ribosomal protein L32	polymer	57	6463.4	1	UniProt (P0A7N4) Pfam (PF01783)	Escherichia coli	ribosomal protein bL32
31	EA (o)	50S ribosomal protein L33	polymer	55	6388.6	1	UniProt (P0A7N9) Pfam (PF00471)	Escherichia coli	ribosomal protein bL33
32	FA (p)	50S ribosomal protein L34	polymer	46	5397.5	1	UniProt (P0A7P5) Pfam (PF00468)	Escherichia coli	ribosomal protein bL34
33	GA (q)	50S ribosomal protein L35	polymer	65	7313.0	1	UniProt (P0A7Q1) Pfam (PF01632)	Escherichia coli	Ribosomal protein A, ribosomal protein bL35
34	HA (r)	50S ribosomal protein L36	polymer	55	6315.6	1	Pfam (PF00444) UniProt (by SIFTS) (P0A7Q6)	Escherichia coli
35	IA (N)	23S rRNA	polymer	2903	941306.2	1	GenBank (937526251)	Escherichia coli
36	JA (L)	50S ribosomal protein L31	polymer	70	7917.1	1	UniProt (J7R8B2) Pfam (PF01197) UniProt (by SIFTS) (P0A7M9)	Escherichia coli
37	KA (C)	50S ribosomal protein L1	polymer	223	23735.5	1	UniProt (A0A4Y8DMK0) Pfam (PF00687) UniProt (by SIFTS) (P0A7L0)	Escherichia coli
38	LA (0)	16S rRNA	polymer	1539	498725.4	1	GenBank (1359176725)	Escherichia coli
39	MA (1)	30S ribosomal protein S2	polymer	239	26581.5	1	UniProt (C3TPN2) Pfam (PF00318) UniProt (by SIFTS) (P0A7V0)	Escherichia coli
40	NA (2)	30S ribosomal protein S3	polymer	218	24293.2	1	UniProt (A0A376HTV6) Pfam (PF07650) Pfam (PF00189) UniProt (by SIFTS) (P0A7V3)	Escherichia coli
41	OA (3)	30S ribosomal protein S4	polymer	206	23514.2	1	UniProt (C3SR62) Pfam (PF00163) Pfam (PF01479) UniProt (by SIFTS) (P0A7V8)	Escherichia coli
42	PA (4)	30S ribosomal protein S5	polymer	162	17120.8	1	UniProt (A0A377C6M5) Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (P0A7W1)	Escherichia coli
43	QA (5)	30S ribosomal protein S6	polymer	131	15201.0	1	UniProt (C3SFQ7) Pfam (PF01250) UniProt (by SIFTS) (P02358)	Escherichia coli K-12
44	RA (6)	Ribosomal protein S7	polymer	156	17618.4	1	UniProt (A0A829CQ35) Pfam (PF00177) UniProt (by SIFTS) (P02359)	Escherichia coli
45	SA (7)	30S ribosomal protein S8	polymer	130	14146.6	1	UniProt (C3SR12) Pfam (PF00410) UniProt (by SIFTS) (P0A7W7)	Escherichia coli
46	TA (8)	30S ribosomal protein S9	polymer	130	14872.2	1	UniProt (A0A1Z3UZ18) Pfam (PF00380) UniProt (by SIFTS) (P0A7X3)	Escherichia coli
47	UA (9)	30S ribosomal protein S10	polymer	103	11755.6	1	UniProt (C3SQT7) Pfam (PF00338) UniProt (by SIFTS) (P0A7R5)	Escherichia coli
48	VA (D)	30S ribosomal protein S11	polymer	129	13844.9	1	UniProt (A0A829AF87) Pfam (PF00411) UniProt (by SIFTS) (P0A7R9)	Escherichia coli
49	WA (E)	30S ribosomal protein S12	polymer	124	13768.2	1	UniProt (C3SQR7) Pfam (PF00164) UniProt (by SIFTS) (P0A7S3)	Escherichia coli
50	XA (F)	30S ribosomal protein S13	polymer	118	13096.4	1	UniProt (A0A7U9IV78) Pfam (PF00416) UniProt (by SIFTS) (P0A7S9)	Escherichia coli
51	YA (G)	30S ribosomal protein S14	polymer	101	11562.5	1	UniProt (A0A090BZT4) Pfam (PF00253) UniProt (by SIFTS) (P0AG59)	Escherichia coli
52	ZA (H)	30S ribosomal protein S15	polymer	89	10290.8	1	UniProt (C3SSQ7) Pfam (PF00312) UniProt (by SIFTS) (P0ADZ4)	Escherichia coli
53	AB (I)	30S ribosomal protein S16	polymer	82	9207.6	1	UniProt (C3SYP2) Pfam (PF00886) UniProt (by SIFTS) (P0A7T3)	Escherichia coli UMEA 3162-1
54	BB (J)	30S ribosomal protein S17	polymer	84	9694.5	1	UniProt (A0A829A8C6) Pfam (PF00366) UniProt (by SIFTS) (P0AG63)	Escherichia coli
55	CB (K)	30S ribosomal protein S18	polymer	75	9006.5	1		Escherichia coli
56	DB (t)	30S ribosomal protein S19	polymer	92	10586.5	1	UniProt (S1EA57) Pfam (PF00203) UniProt (by SIFTS) (P0A7U3)	Escherichia coli
57	EB (u)	30S ribosomal protein S20	polymer	87	9690.4	1	UniProt (C3TRH7) Pfam (PF01649) UniProt (by SIFTS) (P0A7U7)	Escherichia coli
58	FB (v)	30S ribosomal protein S21	polymer	88	10257.9	1		Escherichia coli
59	GB, HB (A)	MAGNESIUM ION	non-polymer		24.3	2	Chemie (MG)
60	IB (A)	POTASSIUM ION	non-polymer		39.1	1	Chemie (K)
61	JB (A)	water	water		18.0	9	Chemie (HOH)

Sequence modifications

B: 1 - 183 (UniProt: Q6KCY1)

PDB	External Database	Details
Ala 99	Asp 99	variant
Ala 101	His 101	variant

a: 1 - 127 (UniProt: A0A829CNM8)

PDB	External Database	Details
Ala 123	Glu 123	variant

g: 1 - 100 (UniProt: A0A829CFV1)

PDB	External Database	Details
Ser 98	Gly 98	variant

L: 1 - 70 (UniProt: J7R8B2)

PDB	External Database	Details
Ser 68	Gly 68	variant

4: 4 - 165 (UniProt: A0A377C6M5)

PDB	External Database	Details
Met 4	Ile 4	variant

5: 1 - 131 (UniProt: C3SFQ7)

PDB	External Database	Details
Ser 101	Pro 101	variant

6: 1 - 156 (UniProt: A0A829CQ35)

PDB	External Database	Details
His 78	Arg 78	variant

8: 1 - 130 (UniProt: A0A1Z3UZ18)

PDB	External Database	Details
Asp 3	Glu 3	variant

D: 1 - 129 (UniProt: A0A829AF87)

PDB	External Database	Details
Ala 5	Pro 5	variant

F: 1 - 118 (UniProt: A0A7U9IV78)

PDB	External Database	Details
Val 1	Met 1	variant

G: 1 - 101 (UniProt: A0A090BZT4)

PDB	External Database	Details
Ala 40	Glu 40	variant

J: 1 - 84 (UniProt: A0A829A8C6)

PDB	External Database	Details
Ala 2	Thr 2	variant

t: 1 - 92 (UniProt: S1EA57)

PDB	External Database	Details
Tyr 82	Gly 82	variant
Tyr 83	His 83	variant

u: 1 - 87 (UniProt: C3TRH7)

PDB	External Database	Details
Leu 1	Met 1	variant

Sequence viewer

Contents of the asymmetric unit

Polymers	Number of chains	58
Polymers	Total formula weight	2264724.4
Non-Polymers*	Number of molecules	3
Non-Polymers*	Total formula weight	87.7
All*	Total formula weight	2264812.1

*Water molecules are not included.

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)