Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

7QGH

Structure of the E. coli disome - collided 70S ribosome

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A (O)	5S rRNA	polymer	120	38790.1	1	GenBank (1845258627)	Escherichia coli K-12
2	B (P)	50S ribosomal protein L2	polymer	275	30234.0	1		Escherichia coli K-12
3	C (Q)	50S ribosomal protein L3	polymer	209	22277.5	1	UniProt (P60438) Pfam (PF00297)	Escherichia coli K-12	Large ribosomal subunit protein uL3
4	D (R)	50S ribosomal protein L4	polymer	201	22121.6	1	UniProt (P60723) Pfam (PF00573)	Escherichia coli K-12	Large ribosomal subunit protein uL4
5	E (S)	50S ribosomal protein L5	polymer	179	20333.6	1	UniProt (P62399) Pfam (PF00281) Pfam (PF00673)	Escherichia coli K-12	Large ribosomal subunit protein uL5
6	F (T)	50S ribosomal protein L6	polymer	177	18932.8	1	UniProt (P0AG55) Pfam (PF00347)	Escherichia coli K-12	Large ribosomal subunit protein uL6
7	G (V)	50S ribosomal protein L11	polymer	142	14894.4	1	UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298)	Escherichia coli K-12	Large ribosomal subunit protein uL11
8	H (W)	50S ribosomal protein L13	polymer	142	16050.6	1	UniProt (P0AA10) Pfam (PF00572)	Escherichia coli K-12	Large ribosomal subunit protein uL13
9	I (X)	50S ribosomal protein L14	polymer	123	13565.1	1	UniProt (P0ADY3) Pfam (PF00238)	Escherichia coli K-12	Large ribosomal subunit protein uL14
10	J (Y)	50S ribosomal protein L15	polymer	144	15008.5	1	UniProt (P02413) Pfam (PF00828)	Escherichia coli K-12	Large ribosomal subunit protein uL15
11	K (Z)	50S ribosomal protein L16	polymer	137	15440.4	1		Escherichia coli K-12
12	L (a)	50S ribosomal protein L17	polymer	127	14335.6	1	UniProt (P0AG44) Pfam (PF01196)	Escherichia coli K-12	Large ribosomal subunit protein bL17
13	M (b)	50S ribosomal protein L18	polymer	117	12794.7	1	UniProt (P0C018) Pfam (PF00861)	Escherichia coli K-12	Large ribosomal subunit protein uL18
14	N (c)	50S ribosomal protein L19	polymer	115	13159.3	1	UniProt (P0A7K6) Pfam (PF01245)	Escherichia coli K-12	Large ribosomal subunit protein bL19
15	O (d)	50S ribosomal protein L20	polymer	118	13528.0	1	UniProt (P0A7L3) Pfam (PF00453)	Escherichia coli K-12	Large ribosomal subunit protein bL20
16	P (e)	50S ribosomal protein L21	polymer	103	11586.4	1	UniProt (P0AG48) Pfam (PF00829)	Escherichia coli K-12	Large ribosomal subunit protein bL21
17	Q (f)	50S ribosomal protein L22	polymer	110	12253.4	1	UniProt (P61175) Pfam (PF00237)	Escherichia coli K-12	Large ribosomal subunit protein uL22
18	R (g)	50S ribosomal protein L23	polymer	100	11252.2	1	UniProt (P0ADZ0) Pfam (PF00276)	Escherichia coli K-12	Large ribosomal subunit protein uL23
19	S (h)	50S ribosomal protein L24	polymer	104	11339.3	1	UniProt (P60624) Pfam (PF00467) Pfam (PF17136)	Escherichia coli K-12	Large ribosomal subunit protein uL24
20	T (i)	50S ribosomal protein L25	polymer	94	10713.5	1	UniProt (P68919) Pfam (PF01386)	Escherichia coli K-12	Large ribosomal subunit protein bL25
21	U (j)	50S ribosomal protein L27	polymer	85	9093.5	1	UniProt (P0A7L8) Pfam (PF01016)	Escherichia coli K-12	Large ribosomal subunit protein bL27
22	V (k)	50S ribosomal protein L28	polymer	78	9027.6	1	UniProt (P0A7M2) Pfam (PF00830)	Escherichia coli K-12	Large ribosomal subunit protein bL28
23	W (l)	50S ribosomal protein L29	polymer	63	7286.5	1	UniProt (P0A7M6) Pfam (PF00831)	Escherichia coli K-12	Large ribosomal subunit protein uL29
24	X (m)	50S ribosomal protein L30	polymer	59	6554.8	1	UniProt (P0AG51) Pfam (PF00327)	Escherichia coli K-12	Large ribosomal subunit protein uL30
25	Y (n)	50S ribosomal protein L32	polymer	57	6463.4	1	UniProt (P0A7N4) Pfam (PF01783)	Escherichia coli K-12	Large ribosomal subunit protein bL32
26	Z (o)	50S ribosomal protein L33	polymer	55	6388.6	1	UniProt (P0A7N9) Pfam (PF00471)	Escherichia coli K-12	Large ribosomal subunit protein bL33
27	AA (p)	50S ribosomal protein L34	polymer	47	5525.6	1		Escherichia coli K-12
28	BA (q)	50S ribosomal protein L35	polymer	67	7557.3	1		Escherichia coli K-12
29	CA (r)	50S ribosomal protein L36	polymer	55	6315.6	1		Escherichia coli K-12
30	DA (N)	23S rRNA	polymer	2903	941306.2	1		Escherichia coli K-12
31	EA (L)	50S ribosomal protein L31	polymer	70	7917.1	1	UniProt (P0A7M9) Pfam (PF01197)	Escherichia coli K-12	Large ribosomal subunit protein bL31-A
32	FA (C)	50S ribosomal protein L1	polymer	223	23735.5	1	UniProt (P0A7L0) Pfam (PF00687)	Escherichia coli K-12	Large ribosomal subunit protein uL1
33	GA (U)	50S ribosomal protein L9	polymer	149	15789.0	1	UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948)	Escherichia coli K-12	Large ribosomal subunit protein bL9
34	HA (M)	P-site tRNA	polymer	75	24060.3	1	GenBank (1847035720)	Escherichia coli K-12
35	IA (x)	mRNA	polymer	692	221443.1	1		Escherichia coli K-12
36	JA (0)	16S rRNA	polymer	1539	498725.4	1	GenBank (1758835854)	Escherichia coli K-12
37	KA (1)	30S ribosomal protein S2	polymer	244	27096.1	1		Escherichia coli K-12
38	LA (2)	30S ribosomal protein S3	polymer	237	26466.8	1		Escherichia coli K-12
39	MA (3)	30S ribosomal protein S4	polymer	206	23514.2	1	UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479)	Escherichia coli K-12	Small ribosomal subunit protein uS4
40	NA (4)	30S ribosomal protein S5	polymer	162	17120.8	1	UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719)	Escherichia coli K-12	Small ribosomal subunit protein uS5
41	OA (5)	30S ribosomal protein S6, non-modified isoform	polymer	131	15201.0	1	UniProt (P02358) Pfam (PF01250)	Escherichia coli K-12
42	PA (6)	30S ribosomal protein S7	polymer	152	16992.7	1	UniProt (P02359) Pfam (PF00177)	Escherichia coli K-12	Small ribosomal subunit protein uS7
43	QA (7)	30S ribosomal protein S8	polymer	130	14146.6	1	UniProt (P0A7W7) Pfam (PF00410)	Escherichia coli K-12	Small ribosomal subunit protein uS8
44	RA (8)	30S ribosomal protein S9	polymer	130	14872.2	1	UniProt (P0A7X3) Pfam (PF00380)	Escherichia coli K-12	Small ribosomal subunit protein uS9
45	SA (9)	30S ribosomal protein S10	polymer	110	12541.5	1		Escherichia coli K-12
46	TA (A)	30S ribosomal protein S11	polymer	129	13844.9	1	UniProt (P0A7R9) Pfam (PF00411)	Escherichia coli K-12	Small ribosomal subunit protein uS11
47	UA (B)	30S ribosomal protein S12	polymer	124	13768.2	1	UniProt (P0A7S3) Pfam (PF00164)	Escherichia coli K-12	Small ribosomal subunit protein uS12
48	VA (D)	30S ribosomal protein S13	polymer	118	13096.4	1	UniProt (P0A7S9) Pfam (PF00416)	Escherichia coli K-12	Small ribosomal subunit protein uS13
49	WA (E)	30S ribosomal protein S14	polymer	101	11562.5	1	UniProt (P0AG59) Pfam (PF00253)	Escherichia coli K-12	Small ribosomal subunit protein uS14
50	XA (F)	30S ribosomal protein S15	polymer	89	10290.8	1	UniProt (P0ADZ4) Pfam (PF00312)	Escherichia coli K-12	Small ribosomal subunit protein uS15
51	YA (G)	30S ribosomal protein S16	polymer	100	11159.7	1		Escherichia coli K-12
52	ZA (H)	30S ribosomal protein S17	polymer	84	9694.5	1	UniProt (P0AG63) Pfam (PF00366)	Escherichia coli K-12	Small ribosomal subunit protein uS17
53	AB (I)	30S ribosomal protein S18	polymer	75	9006.5	1	UniProt (P0A7T7) Pfam (PF01084)	Escherichia coli K-12	Small ribosomal subunit protein bS18
54	BB (J)	30S ribosomal protein S19	polymer	92	10586.5	1		Escherichia coli K-12
55	CB (K)	30S ribosomal protein S20	polymer	87	9690.4	1	UniProt (P0A7U7) Pfam (PF01649)	Escherichia coli K-12	Small ribosomal subunit protein bS20
56	DB (s)	30S ribosomal protein S21	polymer	88	10257.9	1		Escherichia coli K-12
57	EB (t)	30S ribosomal protein S1	polymer	557	61224.9	1	UniProt (P0AG67) Pfam (PF00575)	Escherichia coli K-12	Bacteriophage Q beta RNA-directed RNA polymerase subunit I,Small ribosomal subunit protein bS1
58	FB (u)	A-site tRNA	polymer	73	23546.0	1	GenBank (1851743410)	Escherichia coli K-12
59	GB, HB (u)	MAGNESIUM ION	non-polymer		24.3	2	Chemie (MG)
60	IB (u)	POTASSIUM ION	non-polymer		39.1	1	Chemie (K)
61	JB (u)	water	water		18.0	9	Chemie (HOH)

Sequence modifications

a: 1 - 127 (UniProt: P0AG44)

PDB	External Database	Details
Ala 123	Glu 123	conflict

g: 1 - 100 (UniProt: P0ADZ0)

PDB	External Database	Details
Ser 98	Gly 98	conflict

j: 1 - 85 (UniProt: P0A7L8)

PDB	External Database	Details
Unk 3	His 3	conflict

L: 1 - 70 (UniProt: P0A7M9)

PDB	External Database	Details
Ser 68	Gly 68	conflict

4: 4 - 165 (UniProt: P0A7W1)

PDB	External Database	Details
Met 4	Ile 4	conflict

5: 1 - 131 (UniProt: P02358)

PDB	External Database	Details
Ser 101	Pro 101	conflict

8: 1 - 130 (UniProt: P0A7X3)

PDB	External Database	Details
Asp 3	Glu 3	conflict

A: 1 - 129 (UniProt: P0A7R9)

PDB	External Database	Details
Ala 5	Pro 5	conflict

D: 1 - 118 (UniProt: P0A7S9)

PDB	External Database	Details
Val 1	Met 1	conflict

E: 1 - 101 (UniProt: P0AG59)

PDB	External Database	Details
Ala 40	Asp 40	conflict

H: 1 - 84 (UniProt: P0AG63)

PDB	External Database	Details
Ala 2	Thr 2	conflict

I: 1 - 75 (UniProt: P0A7T7)

PDB	External Database	Details
Thr 15	Ala 15	conflict
Val 19	Gln 19	conflict

K: 1 - 87 (UniProt: P0A7U7)

PDB	External Database	Details
Leu 1	Met 1	conflict

t: 1 - 557 (UniProt: P0AG67)

PDB	External Database	Details
Val 241	Ile 241	conflict

u: 1 - 73 (GenBank: 1851743410)

PDB	External Database	Details
G 3	C 2534674	conflict
C 70	G 2534741	conflict

Sequence viewer

Contents of the asymmetric unit

Polymers	Number of chains	58
Polymers	Total formula weight	2511481.4
Non-Polymers*	Number of molecules	3
Non-Polymers*	Total formula weight	87.7
All*	Total formula weight	2511569.1

*Water molecules are not included.

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)