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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7QG8

Structure of the collided E. coli disome - VemP-stalled 70S ribosome

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA-site tRNApolymer7323546.01Escherichia coli K-12
2sVemP nascent chainpolymer17920531.11Vibrio alginolyticus
3MP-site tRNApolymer7524060.31GenBank (1847035720)Escherichia coli K-12
4O5S rRNApolymer12038790.11GenBank (1845258627)Escherichia coli K-12
5P50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL2
6Q50S ribosomal protein L3polymer20922277.51UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL3
7R50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL4
8S50S ribosomal protein L5polymer17920333.61UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL5
9T50S ribosomal protein L6polymer17718932.81UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL6
10U50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL9
11V50S ribosomal protein L11polymer14214894.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL11
12W50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL13
13X50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL14
14Y50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL15
15Z50S ribosomal protein L16polymer13615312.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL16
16a50S ribosomal protein L17polymer12714335.61UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL17
17b50S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL18
18c50S ribosomal protein L19polymer11513159.31UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL19
19d50S ribosomal protein L20polymer11813528.01UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL20
20e50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL21
21f50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL22
22g50S ribosomal protein L23polymer10011252.21UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL23
23h50S ribosomal protein L24polymer10411339.31UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL24
24i50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL25
25j50S ribosomal protein L27polymer859093.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL27
26k50S ribosomal protein L28polymer789027.61UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL28
27l50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL29
28m50S ribosomal protein L30polymer596554.81UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL30
29n50S ribosomal protein L32polymer576463.41UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL32
30o50S ribosomal protein L33polymer556388.61UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL33
31p50S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL34
32q50S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL35,Ribosomal protein A
33r50S ribosomal protein L36polymer556315.61Escherichia coli K-12
34N23S rRNApolymer2903941306.21GenBank (939732440)Escherichia coli K-12
35L50S ribosomal protein L31polymer707917.11UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL31-A
36C50S ribosomal protein L1polymer22323735.51UniProt (P0A7L0)
Pfam (PF00687)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL1
37016S rRNApolymer1539498725.41GenBank (1789840096)Escherichia coli K-12
38130S ribosomal protein S2polymer23926581.51UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS2
39230S ribosomal protein S3polymer21824293.21UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS3
40330S ribosomal protein S4polymer20623514.21UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS4
41430S ribosomal protein S5polymer16217120.81UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS5
42530S ribosomal protein S6, non-modified isoformpolymer13115201.01UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli K-12
43630S ribosomal protein S7polymer15617618.41UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS7
44730S ribosomal protein S8polymer13014146.61UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS8
45830S ribosomal protein S9polymer13014872.21UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS9
46930S ribosomal protein S10polymer10311755.61UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS10,Transcription termination/antitermination protein NusE
47D30S ribosomal protein S11polymer12913844.91UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS11
48E30S ribosomal protein S12polymer12413768.21UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS12
49F30S ribosomal protein S13polymer11813096.41UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS13
50G30S ribosomal protein S14polymer10111562.51UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS14
51H30S ribosomal protein S15polymer8910290.81UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS15
52I30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS16
53J30S ribosomal protein S17polymer849694.51UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS17
54K30S ribosomal protein S18polymer759006.51UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS18
55t30S ribosomal protein S19polymer9210586.51UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS19
56u30S ribosomal protein S20polymer879690.41UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS20
57v30S ribosomal protein S21polymer8810257.91Escherichia coli K-12
58AMAGNESIUM IONnon-polymer24.32Chemie (MG)
59APOTASSIUM IONnon-polymer39.11Chemie (K)
60waterwater18.09Chemie (HOH)
Sequence modifications
a: 1 - 127 (UniProt: P0AG44)
PDBExternal DatabaseDetails
Ala 123Glu 123variant
g: 1 - 100 (UniProt: P0ADZ0)
PDBExternal DatabaseDetails
Ser 98Gly 98variant
j: 1 - 85 (UniProt: P0A7L8)
PDBExternal DatabaseDetails
Unk 3His 3variant
L: 1 - 70 (UniProt: P0A7M9)
PDBExternal DatabaseDetails
Ser 68Gly 68variant
4: 4 - 165 (UniProt: P0A7W1)
PDBExternal DatabaseDetails
Met 4Ile 4variant
5: 1 - 131 (UniProt: P02358)
PDBExternal DatabaseDetails
Ser 101Pro 101variant
6: 1 - 156 (UniProt: P02359)
PDBExternal DatabaseDetails
His 78Arg 78variant
8: 1 - 130 (UniProt: P0A7X3)
PDBExternal DatabaseDetails
Asp 3Glu 3variant
D: 1 - 129 (UniProt: P0A7R9)
PDBExternal DatabaseDetails
Ala 5Pro 5variant
F: 1 - 118 (UniProt: P0A7S9)
PDBExternal DatabaseDetails
Val 1Met 1variant
G: 1 - 101 (UniProt: P0AG59)
PDBExternal DatabaseDetails
Ala 40Asp 40variant
J: 1 - 84 (UniProt: P0AG63)
PDBExternal DatabaseDetails
Ala 2Thr 2variant
K: 1 - 75 (UniProt: P0A7T7)
PDBExternal DatabaseDetails
Thr 15Ala 15variant
Val 19Gln 19variant
t: 1 - 92 (UniProt: P0A7U3)
PDBExternal DatabaseDetails
Tyr 82Gly 82variant
Tyr 83His 83variant
u: 1 - 87 (UniProt: P0A7U7)
PDBExternal DatabaseDetails
Leu 1Met 1variant
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains57
Total formula weight2243733.1
Non-Polymers*Number of molecules3
Total formula weight87.7
All*Total formula weight2243820.8
*Water molecules are not included.

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PDB entries from 2024-07-17

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