7Q9M
Beta-53 fab in complex with SARS-CoV-2 beta-Spike glycoprotein
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1285 | 141994.0 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein |
2 | H, J, E | Beta-53 fab heavy chain | polymer | 226 | 24215.1 | 3 | Homo sapiens | ||
3 | L, K, F | Beta-53 fab light chain | polymer | 215 | 23494.0 | 3 | Homo sapiens | ||
4 | D, R | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 2 | In PDB GlyTouCan (G15407YE) | |||
5 | G, I, M, N, O... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 11 | In PDB GlyTouCan (G42666HT) | |||
6 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 15 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1205 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Phe 18 | Leu 18 | variant |
Ala 80 | Asp 80 | variant |
Gly 215 | Asp 215 | variant |
- | Leu 242 | deletion |
- | Ala 243 | deletion |
- | Leu 244 | deletion |
Ile 243 | Arg 246 | variant |
Asn 414 | Lys 417 | variant |
Lys 481 | Glu 484 | variant |
Tyr 498 | Asn 501 | variant |
Gly 611 | Asp 614 | variant |
Gly 679 | Arg 682 | conflict |
Ser 680 | Arg 683 | conflict |
Ser 682 | Arg 685 | conflict |
Val 698 | Ala 701 | variant |
Pro 983 | Lys 986 | conflict |
Pro 984 | Val 987 | conflict |
Gly 1206 | - | expression tag |
Ser 1207 | - | expression tag |
Gly 1208 | - | expression tag |
Tyr 1209 | - | expression tag |
Ile 1210 | - | expression tag |
Pro 1211 | - | expression tag |
Glu 1212 | - | expression tag |
Ala 1213 | - | expression tag |
Pro 1214 | - | expression tag |
Arg 1215 | - | expression tag |
Asp 1216 | - | expression tag |
Gly 1217 | - | expression tag |
Gln 1218 | - | expression tag |
Ala 1219 | - | expression tag |
Tyr 1220 | - | expression tag |
Val 1221 | - | expression tag |
Arg 1222 | - | expression tag |
Lys 1223 | - | expression tag |
Asp 1224 | - | expression tag |
Gly 1225 | - | expression tag |
Glu 1226 | - | expression tag |
Trp 1227 | - | expression tag |
Val 1228 | - | expression tag |
Leu 1229 | - | expression tag |
Leu 1230 | - | expression tag |
Ser 1231 | - | expression tag |
Thr 1232 | - | expression tag |
Phe 1233 | - | expression tag |
Leu 1234 | - | expression tag |
Gly 1235 | - | expression tag |
Arg 1236 | - | expression tag |
Ser 1237 | - | expression tag |
Leu 1238 | - | expression tag |
Glu 1239 | - | expression tag |
Val 1240 | - | expression tag |
Leu 1241 | - | expression tag |
Phe 1242 | - | expression tag |
Gln 1243 | - | expression tag |
Gly 1244 | - | expression tag |
Pro 1245 | - | expression tag |
Gly 1246 | - | expression tag |
His 1247 | - | expression tag |
His 1248 | - | expression tag |
His 1249 | - | expression tag |
His 1250 | - | expression tag |
His 1251 | - | expression tag |
His 1252 | - | expression tag |
His 1253 | - | expression tag |
His 1254 | - | expression tag |
Gly 1255 | - | expression tag |
Ser 1256 | - | expression tag |
Ala 1257 | - | expression tag |
Trp 1258 | - | expression tag |
Ser 1259 | - | expression tag |
His 1260 | - | expression tag |
Pro 1261 | - | expression tag |
Gln 1262 | - | expression tag |
Phe 1263 | - | expression tag |
Glu 1264 | - | expression tag |
Lys 1265 | - | expression tag |
Gly 1266 | - | expression tag |
Gly 1267 | - | expression tag |
Gly 1268 | - | expression tag |
Ser 1269 | - | expression tag |
Gly 1270 | - | expression tag |
Gly 1271 | - | expression tag |
Gly 1272 | - | expression tag |
Ser 1273 | - | expression tag |
Gly 1274 | - | expression tag |
Gly 1275 | - | expression tag |
Ser 1276 | - | expression tag |
Ala 1277 | - | expression tag |
Trp 1278 | - | expression tag |
Ser 1279 | - | expression tag |
His 1280 | - | expression tag |
Pro 1281 | - | expression tag |
Gln 1282 | - | expression tag |
Phe 1283 | - | expression tag |
Glu 1284 | - | expression tag |
Lys 1285 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 9 |
Total formula weight | 569109.3 | |
Branched | Number of molecules | 13 |
Total formula weight | 5841.5 | |
Non-Polymers* | Number of molecules | 15 |
Total formula weight | 3318.1 | |
All* | Total formula weight | 578268.9 |