7Q4K
Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (AA) | 16S rRNA | polymer | 1534 | 497405.0 | 1 | GenBank (1758835854) | Escherichia coli | |
| 2 | B (AB) | 30S ribosomal protein S2 | polymer | 241 | 26781.7 | 1 | UniProt (C3TPN2) | Escherichia coli | |
| 3 | C (AC) | 30S ribosomal protein S3 | polymer | 233 | 26031.3 | 1 | UniProt (C3SQX2) | Escherichia coli | |
| 4 | D (AD) | 30S ribosomal protein S4 | polymer | 206 | 23514.2 | 1 | UniProt (C3SR62) | Escherichia coli | |
| 5 | E (AE) | 30S ribosomal protein S5 | polymer | 167 | 17629.4 | 1 | UniProt (C3SR27) | Escherichia coli | |
| 6 | F (AF) | 30S ribosomal protein S6 | polymer | 135 | 15727.5 | 1 | UniProt (P02358) Pfam (PF01250) | Escherichia coli | Small ribosomal subunit protein bS6 |
| 7 | G (AG) | 30S ribosomal protein S7 | polymer | 179 | 20055.2 | 1 | UniProt (P02359) Pfam (PF00177) | Escherichia coli K-12 | Small ribosomal subunit protein uS7 |
| 8 | H (AH) | 30S ribosomal protein S8 | polymer | 130 | 14146.6 | 1 | UniProt (C3SR12) | Escherichia coli | |
| 9 | I (AI) | 30S ribosomal protein S9 | polymer | 130 | 14886.3 | 1 | UniProt (C3SRY2) | Escherichia coli | |
| 10 | J (AJ) | 30S ribosomal protein S10 | polymer | 103 | 11755.6 | 1 | UniProt (C3SQT7) | Escherichia coli | |
| 11 | K (AK) | 30S ribosomal protein S11 | polymer | 129 | 13871.0 | 1 | UniProt (C3SR57) | Escherichia coli | |
| 12 | L (AL) | 30S ribosomal protein S12 | polymer | 124 | 13814.2 | 1 | UniProt (C3SQR7) | Escherichia coli | |
| 13 | M (AM) | 30S ribosomal protein S13 | polymer | 118 | 13128.5 | 1 | UniProt (C3SR52) | Escherichia coli | |
| 14 | N (AN) | 30S ribosomal protein S14 | polymer | 102 | 11677.6 | 1 | UniProt (C3SR07) | Escherichia coli | |
| 15 | O (AO) | 30S ribosomal protein S15 | polymer | 89 | 10290.8 | 1 | UniProt (C3SSQ7) | Escherichia coli | |
| 16 | P (AP) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (C3SYP2) | Escherichia coli | |
| 17 | Q (AQ) | 30S ribosomal protein S17 | polymer | 84 | 9724.5 | 1 | UniProt (C3SQY7) | Escherichia coli | |
| 18 | R (AR) | 30S ribosomal protein S18 | polymer | 75 | 9005.5 | 1 | UniProt (C3SFP7) | Escherichia coli | |
| 19 | S (AS) | 30S ribosomal protein S19 | polymer | 92 | 10455.4 | 1 | UniProt (C3SQW2) | Escherichia coli | |
| 20 | T (AT) | 30S ribosomal protein S20 | polymer | 87 | 9708.5 | 1 | UniProt (C3TRH7) | Escherichia coli | |
| 21 | U (AU) | 30S ribosomal protein S21 | polymer | 71 | 8524.0 | 1 | UniProt (C3STZ7) | Escherichia coli | |
| 22 | V (BA) | 23S rRNA | polymer | 2903 | 941505.4 | 1 | GenBank (1109114233) | Escherichia coli | |
| 23 | W (BB) | 5S rRNA | polymer | 120 | 38790.1 | 1 | GenBank (CP035706.1) | Escherichia coli | |
| 24 | X (BC) | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli | ribosomal protein uL2 |
| 25 | Y (BD) | 50S ribosomal protein L3 | polymer | 209 | 22291.6 | 1 | UniProt (P60438) Pfam (PF00297) | Escherichia coli | Large ribosomal subunit protein uL3 |
| 26 | Z (BE) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) | Escherichia coli | ribosomal protein uL4 |
| 27 | AA (BF) | 50S ribosomal protein L5 | polymer | 179 | 20333.6 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) | Escherichia coli | ribosomal protein uL5 |
| 28 | BA (BG) | 50S ribosomal protein L6 | polymer | 177 | 18932.8 | 1 | UniProt (P0AG55) Pfam (PF00347) | Escherichia coli | ribosomal protein uL6 |
| 29 | CA (BH) | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) | Escherichia coli | ribosomal protein bL9 |
| 30 | DA (BI) | 50S ribosomal protein L31 | polymer | 70 | 7887.1 | 1 | UniProt (U9XX47) | Escherichia coli | |
| 31 | EA (BJ) | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) Pfam (PF00572) | Escherichia coli | ribosomal protein uL13 |
| 32 | FA (BK) | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) Pfam (PF00238) | Escherichia coli | ribosomal protein uL14 |
| 33 | GA (BL) | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) | Escherichia coli | ribosomal protein uL15 |
| 34 | HA (BM) | 50S ribosomal protein L16 | polymer | 136 | 15327.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) | Escherichia coli | Large ribosomal subunit protein uL16 |
| 35 | IA (BN) | 50S ribosomal protein L17 | polymer | 127 | 14393.7 | 1 | UniProt (P0AG44) Pfam (PF01196) | Escherichia coli | ribosomal protein bL17 |
| 36 | JA (BO) | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) | Escherichia coli | ribosomal protein uL18 |
| 37 | KA (BP) | 50S ribosomal protein L19 | polymer | 115 | 13159.3 | 1 | UniProt (P0A7K6) Pfam (PF01245) | Escherichia coli | ribosomal protein bL19 |
| 38 | LA (BQ) | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (P0A7L3) Pfam (PF00453) | Escherichia coli | ribosomal protein bL20 |
| 39 | MA (BR) | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) | Escherichia coli | ribosomal protein bL21 |
| 40 | NA (BS) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) | Escherichia coli | ribosomal protein uL22 |
| 41 | OA (BT) | 50S ribosomal protein L23 | polymer | 100 | 11222.2 | 1 | UniProt (P0ADZ0) Pfam (PF00276) | Escherichia coli | ribosomal protein uL23 |
| 42 | PA (BU) | 50S ribosomal protein L24 | polymer | 104 | 11339.3 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) | Escherichia coli | ribosomal protein uL24 |
| 43 | QA (BV) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) | Escherichia coli | ribosomal protein bL25 |
| 44 | RA (BW) | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) | Escherichia coli | ribosomal protein bL27 |
| 45 | SA (BX) | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (P0A7M2) Pfam (PF00830) | Escherichia coli | ribosomal protein bL28 |
| 46 | TA (BY) | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) Pfam (PF00831) | Escherichia coli | ribosomal protein uL29 |
| 47 | UA (BZ) | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (P0AG51) Pfam (PF00327) | Escherichia coli | ribosomal protein uL30 |
| 48 | VA (B0) | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (P0A7N4) Pfam (PF01783) | Escherichia coli | ribosomal protein bL32 |
| 49 | WA (B1) | 50S ribosomal protein L33 | polymer | 55 | 6388.6 | 1 | UniProt (P0A7N9) Pfam (PF00471) | Escherichia coli | ribosomal protein bL33 |
| 50 | XA (B2) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) | Escherichia coli | ribosomal protein bL34 |
| 51 | YA (B3) | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) Pfam (PF01632) | Escherichia coli | Ribosomal protein A, ribosomal protein bL35 |
| 52 | ZA (B4) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) Pfam (PF00444) | Escherichia coli | Ribosomal protein B, ribosomal protein bL36 |
| 53 | AB (D1) | MsrDL: FME-TYR-LEU-ILE-PHE-MET | polymer | 6 | 845.1 | 1 | Streptococcus pneumoniae | ||
| 54 | BB (D2) | Met-tRNA (P site) | polymer | 77 | 25084.2 | 1 | Escherichia coli | ||
| 55 | CB (D3) | Phe-tRNA (E site) | polymer | 76 | 24620.8 | 1 | Escherichia coli | ||
| 56 | DB (D4) | MsrDL mRNA | polymer | 9 | 2817.7 | 1 | Streptococcus pneumoniae | ||
| 57 | AC, AD, AE, AF, AG... (AA, BA, BC, BD, D2) | MAGNESIUM ION | non-polymer | 24.3 | 172 | Chemie (MG) | |||
| 58 | NC (BA) | ERYTHROMYCIN A | non-polymer | 733.9 | 1 | Chemie (ERY) | |||
| 59 | AI, BI, CI, DI, EI... (BA, BC, BD, BE, BJ...) | water | water | 18.0 | 800 | Chemie (HOH) |
Sequence modifications
AN: 0 - 101 (UniProt: C3SR07)
| PDB | External Database | Details |
|---|---|---|
| Ala 35 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 56 |
| Total formula weight | 2191179.6 | |
| Non-Polymers* | Number of molecules | 173 |
| Total formula weight | 4914.4 | |
| All* | Total formula weight | 2196094.0 |
