7Q0F
Structure of Candida albicans 80S ribosome in complex with phyllanthoside
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (1) | 25S ribosomal RNA | polymer | 3359 | 1085306.3 | 1 | GenBank (1078736431) | Candida albicans SC5314 | |
| 2 | B (3) | 5S ribosomal RNA | polymer | 121 | 38943.1 | 1 | GenBank (1111963231) | Candida albicans SC5314 | |
| 3 | C (4) | 5.8S ribosomal RNA | polymer | 158 | 50683.9 | 1 | Candida albicans | ||
| 4 | D (j) | Ribosomal 60S subunit protein L2A | polymer | 254 | 27366.6 | 1 | UniProt (A0A1D8PF08) Pfam (PF00181) Pfam (PF03947) | Candida albicans SC5314 | |
| 5 | E (k) | Ribosomal 60S subunit protein L3 | polymer | 389 | 44040.8 | 1 | UniProt (Q59LS1) Pfam (PF00297) | Candida albicans SC5314 | |
| 6 | F (l) | Ribosomal 60S subunit protein L4B | polymer | 363 | 39282.4 | 1 | UniProt (A0A1D8PFV1) Pfam (PF00573) Pfam (PF14374) | Candida albicans SC5314 | |
| 7 | G (m) | Ribosomal 60S subunit protein L5 | polymer | 298 | 34558.0 | 1 | UniProt (Q5AGZ7) Pfam (PF17144) Pfam (PF14204) | Candida albicans SC5314 | |
| 8 | H (n) | 60S ribosomal protein L6 | polymer | 176 | 19798.0 | 1 | UniProt (A0A1D8PCX8) Pfam (PF01159) | Candida albicans SC5314 | |
| 9 | I (o) | Ribosomal 60S subunit protein L7A | polymer | 241 | 27447.0 | 1 | UniProt (A0A1D8PDL6) Pfam (PF08079) Pfam (PF00327) | Candida albicans SC5314 | |
| 10 | J (p) | 60S ribosomal protein L8 | polymer | 262 | 28549.4 | 1 | UniProt (Q5ANA1) Pfam (PF01248) | Candida albicans SC5314 | |
| 11 | K (q) | Ribosomal 60S subunit protein L9B | polymer | 191 | 21755.2 | 1 | UniProt (Q5AEN2) Pfam (PF00347) | Candida albicans SC5314 | |
| 12 | L (r) | Ribosomal 60S subunit protein L10 | polymer | 220 | 25236.3 | 1 | UniProt (Q5AIB8) Pfam (PF00252) | Candida albicans SC5314 | |
| 13 | M (s) | Ribosomal 60S subunit protein L11B | polymer | 174 | 19859.8 | 1 | UniProt (A0A1D8PHW1) Pfam (PF00281) Pfam (PF00673) | Candida albicans SC5314 | |
| 14 | N (t) | 60S ribosomal protein L13 | polymer | 202 | 23105.8 | 1 | UniProt (O59931) Pfam (PF01294) | Candida albicans SC5314 | |
| 15 | O (u) | Ribosomal 60S subunit protein L14B | polymer | 131 | 14748.5 | 1 | UniProt (A0A1D8PFL9) Pfam (PF01929) | Candida albicans SC5314 | |
| 16 | P (v) | Ribosomal protein L15 | polymer | 204 | 24389.3 | 1 | UniProt (Q5A6R1) Pfam (PF00827) | Candida albicans SC5314 | |
| 17 | Q (w) | Ribosomal 60S subunit protein L16A | polymer | 200 | 22685.8 | 1 | UniProt (Q5AB87) Pfam (PF00572) | Candida albicans SC5314 | |
| 18 | R (x) | Ribosomal 60S subunit protein L17B | polymer | 185 | 21002.9 | 1 | UniProt (Q59TE0) Pfam (PF00237) | Candida albicans SC5314 | |
| 19 | S (y) | Ribosomal 60S subunit protein L18A | polymer | 186 | 20817.4 | 1 | UniProt (A0A1D8PK43) Pfam (PF17135) | Candida albicans SC5314 | |
| 20 | T (z) | Ribosomal protein L19 | polymer | 190 | 21942.8 | 1 | UniProt (A0A1D8PK40) Pfam (PF01280) Pfam (PF25476) | Candida albicans SC5314 | |
| 21 | U (0) | 60S ribosomal protein L20 | polymer | 172 | 20376.9 | 1 | UniProt (A0A1D8PLC9) Pfam (PF01775) | Candida albicans SC5314 | |
| 22 | V (2) | Ribosomal 60S subunit protein L21A | polymer | 160 | 18049.9 | 1 | UniProt (A0A1D8PGY0) Pfam (PF01157) | Candida albicans SC5314 | |
| 23 | W (5) | Ribosomal 60S subunit protein L22B | polymer | 124 | 14107.9 | 1 | UniProt (A0A1D8PM41) Pfam (PF01776) | Candida albicans SC5314 | |
| 24 | X (6) | Ribosomal 60S subunit protein L23B | polymer | 137 | 14508.0 | 1 | UniProt (A0A1D8PPT5) Pfam (PF00238) | Candida albicans SC5314 | |
| 25 | Y (7) | Ribosomal 60S subunit protein L24A | polymer | 155 | 17430.3 | 1 | UniProt (Q5A6A1) Pfam (PF01246) | Candida albicans SC5314 | |
| 26 | Z (8) | Ribosomal 60S subunit protein L25 | polymer | 142 | 15873.6 | 1 | UniProt (A0A1D8PPS1) Pfam (PF03939) Pfam (PF00276) | Candida albicans SC5314 | |
| 27 | AA (9) | Ribosomal 60S subunit protein L26B | polymer | 127 | 14215.5 | 1 | UniProt (A0A1D8PCQ5) Pfam (PF16906) | Candida albicans SC5314 | |
| 28 | BA (AA) | 60S ribosomal protein L27 | polymer | 136 | 15551.4 | 1 | UniProt (A0A1D8PFG4) Pfam (PF01777) | Candida albicans SC5314 | |
| 29 | CA (AB) | Ribosomal 60S subunit protein L28 | polymer | 149 | 16703.4 | 1 | UniProt (A0A1D8PSC5) Pfam (PF00828) | Candida albicans SC5314 | |
| 30 | DA (AC) | 60S ribosomal protein L29 | polymer | 63 | 7135.3 | 1 | UniProt (A0A1D8PF57) Pfam (PF01779) | Candida albicans SC5314 | |
| 31 | EA (AD) | Ribosomal 60S subunit protein L30 | polymer | 106 | 11520.4 | 1 | UniProt (A0A1D8PM75) Pfam (PF01248) | Candida albicans SC5314 | |
| 32 | FA (AE) | Ribosomal 60S subunit protein L31B | polymer | 112 | 12993.1 | 1 | UniProt (A0A1D8PHF5) Pfam (PF01198) | Candida albicans SC5314 | |
| 33 | GA (AF) | Ribosomal 60S subunit protein L32 | polymer | 131 | 14993.7 | 1 | UniProt (A0A1D8PPN6) Pfam (PF01655) | Candida albicans SC5314 | |
| 34 | HA (AG) | Ribosomal 60S subunit protein L33A | polymer | 107 | 12138.2 | 1 | UniProt (A0A1D8PHH4) Pfam (PF01247) | Candida albicans SC5314 | |
| 35 | IA (AH) | Ribosomal 60S subunit protein L34B | polymer | 122 | 13774.3 | 1 | UniProt (A0A1D8PDZ1) Pfam (PF01199) | Candida albicans SC5314 | |
| 36 | JA (AI) | Ribosomal 60S subunit protein L35A | polymer | 120 | 14118.8 | 1 | UniProt (A0A1D8PK30) Pfam (PF00831) | Candida albicans SC5314 | |
| 37 | KA (AJ) | 60S ribosomal protein L36 | polymer | 99 | 11096.2 | 1 | UniProt (A0A1D8PH21) Pfam (PF01158) | Candida albicans SC5314 | |
| 38 | LA (AK) | Ribosomal protein L37 | polymer | 90 | 10102.8 | 1 | UniProt (A0A1D8PF45) Pfam (PF01907) | Candida albicans SC5314 | |
| 39 | MA (AL) | Ribosomal 60S subunit protein L38 | polymer | 78 | 8911.5 | 1 | UniProt (A0A1D8PG16) Pfam (PF01781) | Candida albicans SC5314 | |
| 40 | NA (AM) | 60S ribosomal protein L39 | polymer | 51 | 6347.5 | 1 | UniProt (A0A1D8PDT4) Pfam (PF00832) | Candida albicans SC5314 | |
| 41 | OA (AN) | Rpl40bp | polymer | 52 | 6078.4 | 1 | UniProt (A0A1D8PL68) Pfam (PF01020) | Candida albicans SC5314 | |
| 42 | PA (AO) | 60S ribosomal protein eL41 | polymer | 25 | 3396.3 | 1 | Candida albicans SC5314 | ||
| 43 | QA (AP) | Ribosomal 60S subunit protein L42A | polymer | 106 | 12285.7 | 1 | UniProt (A0A1D8PEV4) Pfam (PF00935) | Candida albicans SC5314 | |
| 44 | RA (AQ) | Ribosomal 60S subunit protein L43A | polymer | 92 | 10136.8 | 1 | UniProt (A0A1D8PP14) Pfam (PF01780) | Candida albicans SC5314 | |
| 45 | SA (i) | HABP4_PAI-RBP1 domain-containing protein | polymer | 267 | 29126.1 | 1 | UniProt (A0A1D8PK71) Pfam (PF09598) | Candida albicans SC5314 | |
| 46 | TA (A) | 18S ribosomal RNA | polymer | 1787 | 575838.6 | 1 | GenBank (1078736431) | Candida albicans SC5314 | |
| 47 | UA (B) | 40S ribosomal protein S0 | polymer | 261 | 28759.3 | 1 | UniProt (O42817) Pfam (PF00318) | Candida albicans SC5314 | |
| 48 | VA (C) | 40S ribosomal protein S1 | polymer | 256 | 29041.9 | 1 | UniProt (P40910) Pfam (PF01015) | Candida albicans SC5314 | S3aE |
| 49 | WA (D) | Ribosomal 40S subunit protein S2 | polymer | 249 | 26917.3 | 1 | UniProt (Q5A900) Pfam (PF00333) Pfam (PF03719) | Candida albicans SC5314 | |
| 50 | XA (E) | Ribosomal 40S subunit protein S3 | polymer | 251 | 27313.6 | 1 | UniProt (A0A1D8PSV5) Pfam (PF07650) Pfam (PF00189) | Candida albicans SC5314 | |
| 51 | YA (F) | 40S ribosomal protein S4 | polymer | 262 | 29435.4 | 1 | UniProt (A0A1D8PCI6) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Candida albicans SC5314 | |
| 52 | ZA (G) | Ribosomal 40S subunit protein S5 | polymer | 225 | 25319.9 | 1 | UniProt (Q5AG43) Pfam (PF00177) | Candida albicans SC5314 | |
| 53 | AB (H) | 40S ribosomal protein S6 | polymer | 236 | 27146.5 | 1 | UniProt (A0A1D8PL99) Pfam (PF01092) | Candida albicans SC5314 | |
| 54 | BB (I) | 40S ribosomal protein S7 | polymer | 186 | 21285.8 | 1 | UniProt (Q5AJ93) Pfam (PF01251) | Candida albicans SC5314 | |
| 55 | CB (J) | 40S ribosomal protein S8 | polymer | 206 | 22802.0 | 1 | UniProt (Q59T44) Pfam (PF01201) | Candida albicans SC5314 | |
| 56 | DB (K) | Ribosomal 40S subunit protein S9B | polymer | 189 | 21765.1 | 1 | UniProt (A0A1D8PGY8) Pfam (PF00163) Pfam (PF01479) | Candida albicans SC5314 | |
| 57 | EB (L) | Ribosomal 40S subunit protein S10A | polymer | 118 | 13836.8 | 1 | UniProt (A0A1D8PI15) Pfam (PF03501) | Candida albicans SC5314 | |
| 58 | FB (M) | Ribosomal 40S subunit protein S11A | polymer | 155 | 17638.6 | 1 | UniProt (A0A1D8PN83) Pfam (PF16205) Pfam (PF00366) | Candida albicans SC5314 | |
| 59 | GB (N) | 40S ribosomal protein S12 | polymer | 143 | 15715.9 | 1 | UniProt (Q5ADQ6) Pfam (PF01248) | Candida albicans SC5314 | |
| 60 | HB (O) | Ribosomal 40S subunit protein S13 | polymer | 151 | 16976.8 | 1 | UniProt (A0A1D8PPE0) Pfam (PF08069) Pfam (PF00312) | Candida albicans SC5314 | |
| 61 | IB (P) | Ribosomal 40S subunit protein S14B | polymer | 132 | 14052.1 | 1 | UniProt (A0A1D8PDT3) Pfam (PF00411) | Candida albicans SC5314 | |
| 62 | JB (Q) | Ribosomal 40S subunit protein S15 | polymer | 142 | 15967.8 | 1 | UniProt (A0A1D8PK22) Pfam (PF00203) | Candida albicans SC5314 | |
| 63 | KB (R) | Ribosomal 40S subunit protein S16A | polymer | 142 | 15769.5 | 1 | UniProt (A0A1D8PCW6) Pfam (PF00380) | Candida albicans SC5314 | |
| 64 | LB (S) | Ribosomal 40S subunit protein S17B | polymer | 137 | 15770.3 | 1 | UniProt (A0A1D8PEY9) Pfam (PF00833) | Candida albicans SC5314 | |
| 65 | MB (T) | Ribosomal 40S subunit protein S18B | polymer | 145 | 17023.8 | 1 | UniProt (A0A1D8PQQ5) Pfam (PF00416) | Candida albicans SC5314 | |
| 66 | NB (U) | Ribosomal 40S subunit protein S19A | polymer | 145 | 16097.2 | 1 | UniProt (A0A1D8PK61) Pfam (PF01090) | Candida albicans SC5314 | |
| 67 | OB (V) | Ribosomal 40S subunit protein S20 | polymer | 119 | 13366.5 | 1 | UniProt (Q5A389) Pfam (PF00338) | Candida albicans SC5314 | |
| 68 | PB (W) | 40S ribosomal protein S21 | polymer | 87 | 9652.8 | 1 | UniProt (A0A1D8PCG7) Pfam (PF01249) | Candida albicans SC5314 | |
| 69 | QB (X) | 40S ribosomal protein S22-A | polymer | 130 | 14807.2 | 1 | UniProt (Q96W54) Pfam (PF00410) | Candida albicans SC5314 | |
| 70 | RB (Y) | Ribosomal 40S subunit protein S23B | polymer | 145 | 16000.8 | 1 | UniProt (A0A1D8PDU3) Pfam (PF00164) | Candida albicans SC5314 | |
| 71 | SB (Z) | 40S ribosomal protein S24 | polymer | 135 | 15546.9 | 1 | UniProt (Q5A7K0) Pfam (PF01282) | Candida albicans SC5314 | |
| 72 | TB (a) | 40S ribosomal protein S25 | polymer | 105 | 11633.8 | 1 | UniProt (A0A1D8PNQ6) Pfam (PF03297) | Candida albicans SC5314 | |
| 73 | UB (b) | 40S ribosomal protein S26 | polymer | 119 | 13606.1 | 1 | UniProt (Q5ALV6) Pfam (PF01283) | Candida albicans SC5314 | |
| 74 | VB (c) | 40S ribosomal protein S27 | polymer | 82 | 8982.5 | 1 | UniProt (A0A1D8PTI7) Pfam (PF01667) | Candida albicans SC5314 | |
| 75 | WB (d) | Ribosomal 40S subunit protein S28B | polymer | 67 | 7536.8 | 1 | UniProt (A0A1D8PQN0) Pfam (PF01200) | Candida albicans SC5314 | |
| 76 | XB (e) | Ribosomal 40S subunit protein S29A | polymer | 56 | 6615.6 | 1 | UniProt (A0A1D8PTR4) Pfam (PF00253) | Candida albicans SC5314 | |
| 77 | YB (f) | 40S ribosomal protein S30 | polymer | 63 | 7127.4 | 1 | UniProt (A0A1D8PSK2) Pfam (PF04758) | Candida albicans SC5314 | |
| 78 | ZB (g) | Ubiquitin-ribosomal 40S subunit protein S31 fusion protein | polymer | 193 | 22615.5 | 1 | UniProt (Q5A109) Pfam (PF00240) Pfam (PF01599) | Candida albicans SC5314 | |
| 79 | AC (h) | Guanine nucleotide-binding protein subunit beta-like protein | polymer | 317 | 34593.9 | 1 | UniProt (P83774) Pfam (PF00400) | Candida albicans SC5314 | Cytoplasmic antigenic protein 1 |
| 80 | BC (1) | SPERMIDINE | non-polymer | 145.2 | 1 | Chemie (SPD) PubChem (1102) | |||
| 81 | CC (1) | 3-O-acetyl-2-O-(3-O-acetyl-6-deoxy-beta-D-glucopyranosyl)-6-deoxy-1-O-{[(2R,2'S,3a'R,4''S,5''R,6'S,7a'S)-5''-methyl-4''-{[(2E)-3-phenylprop-2-enoyl]oxy}decahydrodispiro[oxirane-2,3'-[1]benzofuran-2',2''-pyran]-6'-yl]carbonyl}-beta-D-glucopyranose | non-polymer | 804.8 | 1 | Chemie (3K5) PubChem (21603792) PubChem (53298409) PubChem (72939) PubChem (332244) PubChem (85325328) PubChem (90474159) PubChem (5363794) PubChem (6436218) PubChem (6713144) PubChem (124918727) PubChem (124918728) PubChem (125040510) PubChem (10056161) PubChem (100992284) PubChem (154497209) PubChem (125040509) PubChem (162944086) PubChem (162944084) PubChem (163185749) PubChem (162944085) PubChem (162944087) | |||
| 82 | DC, EC, FC, GC, HC... (AK, AN, AP, AQ, b...) | ZINC ION | non-polymer | 65.4 | 8 | Chemie (ZN) |
Sequence modifications
P: 1 - 132 (UniProt: A0A1D8PDT3)
| PDB | External Database | Details |
|---|---|---|
| Ias 119 | Asp 119 | modified residue |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 79 |
| Total formula weight | 3119051.3 | |
| Non-Polymers* | Number of molecules | 10 |
| Total formula weight | 1473.3 | |
| All* | Total formula weight | 3120524.7 |
