7PWG
Cryo-EM structure of large subunit of Giardia lamblia ribosome at 2.7 A resolution
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | 1 | rRNA 28S | polymer | 2707 | 878254.5 | 1 | Giardia lamblia ATCC 50803 (Giardia lamblia) | ||
2 | 3 | rRNA 5S | polymer | 120 | 38671.0 | 1 | Giardia lamblia ATCC 50803 (Giardia lamblia) | ||
3 | 4 | rRNA 5.8S | polymer | 139 | 44972.0 | 1 | Giardia lamblia ATCC 50803 (Giardia lamblia) | ||
4 | A | Ribosomal protein L2 | polymer | 251 | 27090.5 | 1 | UniProt (E2RTN4) Pfam (PF00181) Pfam (PF03947) In PDB | Giardia lamblia ATCC 50803 | Ribosomal protein L8 |
5 | B | Ribosomal protein L3 | polymer | 379 | 42715.5 | 1 | UniProt (A8BRZ3) Pfam (PF00297) In PDB | Giardia lamblia ATCC 50803 | |
6 | C | Ribosomal protein L4 | polymer | 316 | 35048.7 | 1 | UniProt (A8B7H8) Pfam (PF00573) Pfam (PF14374) In PDB | Giardia lamblia ATCC 50803 | |
7 | D | Ribosomal protein L5 | polymer | 297 | 33961.4 | 1 | UniProt (E2RU47) Pfam (PF17144) Pfam (PF14204) In PDB | Giardia lamblia ATCC 50803 | |
8 | F | Ribosomal protein L7 | polymer | 235 | 27103.4 | 1 | UniProt (A8BRY6) Pfam (PF00327) In PDB | Giardia lamblia ATCC 50803 | |
9 | G | 60S ribosomal protein L7a | polymer | 225 | 25427.7 | 1 | UniProt (A8BLL7) Pfam (PF01248) In PDB | Giardia lamblia ATCC 50803 | |
10 | H | Ribosomal protein L6 | polymer | 185 | 20889.4 | 1 | UniProt (A8BNT5) Pfam (PF00347) In PDB | Giardia lamblia ATCC 50803 | Ribosomal protein L9 |
11 | I | Ribosomal protein L10 | polymer | 210 | 24283.2 | 1 | UniProt (A8BM86) Pfam (PF00252) In PDB | Giardia lamblia ATCC 50803 | |
12 | J | Ribosomal protein L11 | polymer | 173 | 19767.7 | 1 | UniProt (A8BI95) Pfam (PF00281) Pfam (PF00673) In PDB | Giardia lamblia ATCC 50803 | |
13 | L | 60S ribosomal protein L13 | polymer | 234 | 26640.3 | 1 | UniProt (A8B6M8) Pfam (PF01294) In PDB | Giardia lamblia ATCC 50803 | |
14 | M | Ribosomal protein L14 | polymer | 131 | 14785.5 | 1 | UniProt (A8B4F8) Pfam (PF01929) In PDB | Giardia lamblia ATCC 50803 | |
15 | N | Ribosomal protein L15 | polymer | 204 | 24353.7 | 1 | UniProt (A8B8Z6) Pfam (PF00827) In PDB | Giardia lamblia ATCC 50803 | |
16 | O | Ribosomal protein L13a | polymer | 197 | 22921.9 | 1 | UniProt (A8BU75) Pfam (PF00572) In PDB | Giardia lamblia ATCC 50803 | |
17 | P | Ribosomal protein L17 | polymer | 164 | 18722.8 | 1 | UniProt (A8BE76) Pfam (PF00237) In PDB | Giardia lamblia ATCC 50803 | |
18 | Q | Ribosomal protein L18 | polymer | 179 | 20207.8 | 1 | UniProt (A8B4T7) Pfam (PF17135) In PDB | Giardia lamblia ATCC 50803 | |
19 | R | Ribosomal protein L19 | polymer | 196 | 23199.2 | 1 | UniProt (A8BH61) Pfam (PF01280) In PDB | Giardia lamblia ATCC 50803 | |
20 | S | 60S ribosomal protein L18a | polymer | 173 | 20624.9 | 1 | UniProt (A8BT04) Pfam (PF01775) In PDB | Giardia lamblia ATCC 50803 | |
21 | T | Ribosomal protein L21 | polymer | 159 | 18296.4 | 1 | UniProt (A8B2Q4) Pfam (PF01157) In PDB | Giardia lamblia ATCC 50803 | |
22 | U | Ribosomal protein eL22 | polymer | 171 | 19942.4 | 1 | UniProt (A8BW84) Pfam (PF01776) In PDB | Giardia lamblia ATCC 50803 | |
23 | V | Ribosomal protein L23 | polymer | 142 | 15450.0 | 1 | UniProt (A8BS37) Pfam (PF00238) In PDB | Giardia lamblia ATCC 50803 | |
24 | X | Ribosomal protein L23A | polymer | 141 | 16053.9 | 1 | UniProt (A8BMP6) Pfam (PF03939) Pfam (PF00276) In PDB | Giardia lamblia ATCC 50803 | |
25 | Y | Ribosomal protein L26 | polymer | 135 | 15621.4 | 1 | UniProt (A8BFT3) Pfam (PF16906) In PDB | Giardia lamblia ATCC 50803 | |
26 | Z | 60S ribosomal protein L27 | polymer | 135 | 15374.9 | 1 | UniProt (A8B1T3) Pfam (PF00467) Pfam (PF01777) In PDB | Giardia lamblia ATCC 50803 | |
27 | a | Ribosomal protein L27a | polymer | 149 | 17167.0 | 1 | UniProt (A8BZ78) Pfam (PF00828) In PDB | Giardia lamblia ATCC 50803 | |
28 | b | 60S ribosomal protein L29 | polymer | 62 | 7363.6 | 1 | UniProt (A8BYY2) Pfam (PF01779) In PDB | Giardia lamblia ATCC 50803 | |
29 | c | Ribosomal protein L30 | polymer | 109 | 11698.6 | 1 | UniProt (A8B5N7) Pfam (PF01248) In PDB | Giardia lamblia ATCC 50803 | |
30 | d | Ribosomal protein L31B | polymer | 106 | 12184.1 | 1 | UniProt (A8BMP3) Pfam (PF01198) In PDB | Giardia lamblia ATCC 50803 | Ribosomal protein L31e |
31 | e | Ribosomal protein L32 | polymer | 136 | 15986.0 | 1 | UniProt (A8BMD9) Pfam (PF01655) In PDB | Giardia lamblia ATCC 50803 | |
32 | f | Ribosomal protein L35a | polymer | 123 | 13913.1 | 1 | UniProt (A8BKK5) Pfam (PF01247) In PDB | Giardia lamblia ATCC 50803 | |
33 | g | Ribosomal protein L34 | polymer | 120 | 13528.8 | 1 | UniProt (A8BMF7) Pfam (PF01199) In PDB | Giardia lamblia ATCC 50803 | |
34 | h | Ribosomal protein L29 | polymer | 124 | 14292.2 | 1 | UniProt (A0A644FBK5) Pfam (PF00831) In PDB | Giardia lamblia ATCC 50803 | |
35 | i | Ribosomal protein L36-1 | polymer | 90 | 10586.7 | 1 | UniProt (A8BYA6) Pfam (PF01158) In PDB | Giardia lamblia ATCC 50803 | Ribosomal protein L36e |
36 | j | Ribosomal protein L37 | polymer | 89 | 10329.0 | 1 | UniProt (A8BLV7) Pfam (PF01907) In PDB | Giardia lamblia ATCC 50803 | |
37 | k | Ribosomal L38e | polymer | 77 | 8605.1 | 1 | UniProt (A8B481) Pfam (PF01781) In PDB | Giardia lamblia ATCC 50803 | |
38 | l | Ribosomal protein L39 | polymer | 51 | 6353.7 | 1 | UniProt (A0A644EZB9) Pfam (PF00832) In PDB | Giardia lamblia ATCC 50803 | |
39 | m | Ubiquitin/Ribosomal protein L40e | polymer | 127 | 14343.7 | 1 | UniProt (A8BXE1) Pfam (PF00240) Pfam (PF01020) In PDB | Giardia lamblia ATCC 50803 | Ubiquitin/ribosomal protein CEP52 |
40 | o | Ribosomal protein L44 | polymer | 106 | 12311.7 | 1 | UniProt (A8BQU8) Pfam (PF00935) In PDB | Giardia lamblia ATCC 50803 | |
41 | p | Ribosomal protein L37a | polymer | 94 | 10508.4 | 1 | UniProt (A8BN26) Pfam (PF01780) In PDB | Giardia lamblia ATCC 50803 | |
42 | w | E-site tRNA | polymer | 76 | 24500.6 | 1 | Giardia lamblia ATCC 50803 (Giardia lamblia) | ||
43 | W | Ribosomal protein L24A | polymer | 102 | 12005.2 | 1 | UniProt (A8BRH7) Pfam (PF01246) In PDB | Giardia lamblia ATCC 50803 | |
44 | E | P-site tRNA | polymer | 3 | 894.6 | 1 | Giardia lamblia ATCC 50803 (Giardia lamblia) | ||
45 | 1, 4, C, F, I... | MAGNESIUM ION | non-polymer | 24.3 | 112 | Chemie (MG) | |||
46 | 1, A, B, C, I... | POTASSIUM ION | non-polymer | 39.1 | 181 | Chemie (K) | |||
47 | 1 | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 1 | Chemie (PGE) | |||
48 | water | water | 18.0 | 4397 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 44 |
Total formula weight | 1706952.1 | |
Non-Polymers* | Number of molecules | 294 |
Total formula weight | 9949.1 | |
All* | Total formula weight | 1716901.2 |