7PVD
Structure of the membrane soluble spike complex from the Lassa virus in a C1-symmetric map focused on the ectodomain
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | a, b, c | Glycoprotein G2 | polymer | 244 | 28083.3 | 3 | UniProt (P08669) Pfam (PF00798) In PDB | Lassa virus (strain Mouse/Sierra Leone/Josiah/1976) (LASV) | GP2 |
2 | A, B, C | Pre-glycoprotein polyprotein GP complex | polymer | 259 | 29064.4 | 3 | UniProt (P08669) Pfam (PF00798) In PDB | Lassa virus (strain Mouse/Sierra Leone/Josiah/1976) (LASV) | Pre-GP-C |
3 | D, E, F, G, H... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 9 | In PDB GlyTouCan (G42666HT) | |||
4 | M | alpha-D-xylopyranose-(1-3)-beta-D-glucopyranuronic acid-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranuronic acid-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranuronic acid-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranuronic acid-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranuronic acid-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranuronic acid-(1-3)-alpha-D-xylopyranose | branched | 1999.6 | 1 | In PDB GlyTouCan (G33213YN) | |||
5 | C, a, b, c, A... | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 12 | Chemie (NAG) |
Sequence modifications
a, b, c: 260 - 491 (UniProt: P08669)
PDB | External Database | Details |
---|---|---|
Gly 492 | - | expression tag |
Gly 493 | - | expression tag |
Gly 494 | - | expression tag |
Ser 495 | - | expression tag |
Asp 496 | - | expression tag |
Tyr 497 | - | expression tag |
Lys 498 | - | expression tag |
Asp 499 | - | expression tag |
Asp 500 | - | expression tag |
Asp 501 | - | expression tag |
Asp 502 | - | expression tag |
Lys 503 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 171443.0 | |
Branched | Number of molecules | 10 |
Total formula weight | 5819.2 | |
Non-Polymers* | Number of molecules | 12 |
Total formula weight | 2654.5 | |
All* | Total formula weight | 179916.7 |