7PVD

Structure of the membrane soluble spike complex from the Lassa virus in a C1-symmetric map focused on the ectodomain

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C (a, b, c)	Glycoprotein G2	polymer	244	28083.3	3	UniProt (P08669) Pfam (PF00798)	Lassa virus (strain Mouse/Sierra Leone/Josiah/1976) (LASV)	GP2
2	D, E, F (A, B, C)	Pre-glycoprotein polyprotein GP complex	polymer	259	29064.4	3	UniProt (P08669) Pfam (PF00798)	Lassa virus (strain Mouse/Sierra Leone/Josiah/1976) (LASV)	Pre-GP-C
3	G, H, I, J, K... (D, E, F, G, H...)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	9	In PDB GlyTouCan (G42666HT)
4	P (M)	alpha-D-xylopyranose-(1-3)-beta-D-glucopyranuronic acid-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranuronic acid-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranuronic acid-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranuronic acid-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranuronic acid-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranuronic acid-(1-3)-alpha-D-xylopyranose	branched		1999.6	1	In PDB GlyTouCan (G33213YN)
5	AA, BA, Q, R, S... (C, a, b, c, A...)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	12	Chemie (NAG)

Sequence modifications

a, b, c: 260 - 491 (UniProt: P08669)

PDB	External Database	Details
Gly 492	-	expression tag
Gly 493	-	expression tag
Gly 494	-	expression tag
Ser 495	-	expression tag
Asp 496	-	expression tag
Tyr 497	-	expression tag
Lys 498	-	expression tag
Asp 499	-	expression tag
Asp 500	-	expression tag
Asp 501	-	expression tag
Asp 502	-	expression tag
Lys 503	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	6
	Total formula weight	171443.0
Branched	Number of molecules	10
	Total formula weight	5819.2
Non-Polymers*	Number of molecules	12
	Total formula weight	2654.5
All*	Total formula weight	179916.7

*Water molecules are not included.