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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7PUB

Late assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(CA)		9S rRNApolymer621198441.41GenBank (13740)Trypanosoma brucei brucei
2B
(CC)		uS3mpolymer749070.91Trypanosoma brucei brucei
3C
(CE)		Ribosomal_S5_C domain-containing proteinpolymer43550147.41UniProt (Q38AX6)
Pfam (PF03719)		Trypanosoma brucei bruceiuS5m
4D
(CF)		bS6mpolymer16018861.51UniProt (Q38BW5)Trypanosoma brucei brucei
5E
(CH)		30S ribosomal protein S8, putativepolymer28232766.51UniProt (Q388R7)
Pfam (PF00410)		Trypanosoma brucei bruceiuS8m
6F
(CI)		uS9mpolymer44350201.01UniProt (Q57W62)
Pfam (PF00380)		Trypanosoma brucei brucei
7G
(CJ)		LysM domain-containing proteinpolymer81794321.11UniProt (Q57Z45)
Pfam (PF01476)		Trypanosoma brucei bruceiuS10m
8H
(CK)		uS11mpolymer32637925.91UniProt (Q389T7)Trypanosoma brucei brucei
9I
(CL)		uS12mpolymer8710421.61Trypanosoma brucei brucei
10J
(CN)		uS14mpolymer16619900.01UniProt (Q580I0)Trypanosoma brucei brucei
11K
(CO)		uS15mpolymer42950401.21UniProt (Q4GZ99)Trypanosoma brucei brucei
12L
(CP)		bS16mpolymer18822077.81UniProt (Q384N9)Trypanosoma brucei brucei
13M
(CQ)		30S Ribosomal protein S17, putativepolymer30735632.71UniProt (Q38DP8)
Pfam (PF00366)		Trypanosoma brucei bruceiuS17m
14N
(CR)		bS18mpolymer32036988.71UniProt (Q38AS2)Trypanosoma brucei brucei
15O
(CS)		uS19mpolymer24428364.61Trypanosoma brucei brucei
16P
(CU)		bS21mpolymer19323087.91UniProt (Q580M9)Trypanosoma brucei brucei
17Q
(Ca)		mS22polymer60273064.11UniProt (Q38DR3)Trypanosoma brucei brucei
18R
(Cb)		mS23polymer32536869.61Trypanosoma brucei brucei
19S
(Cd)		mS26polymer44051192.81UniProt (Q38DK6)Trypanosoma brucei brucei
20T
(Cg)		mS29polymer49857048.81Trypanosoma brucei brucei
21U
(Ci)		mS33polymer18121244.11UniProt (Q57WW0)Trypanosoma brucei brucei
22V
(Cj)		mS34polymer25728728.21UniProt (Q57UK0)Trypanosoma brucei brucei
23W
(Ck)		mS35polymer87498277.61UniProt (Q387C7)Trypanosoma brucei brucei
24X
(Cm)		mS37polymer21524757.91UniProt (Q38C96)Trypanosoma brucei brucei
25Y
(Cn)		mS38polymer25028240.61UniProt (Q57VQ9)Trypanosoma brucei brucei
26Z
(Cp)		Protein FYV4, mitochondrialpolymer18722421.51UniProt (Q389L3)
Pfam (PF09597)		Trypanosoma brucei bruceimS41
27AA
(Cq)		Superoxide dismutase, putativepolymer26329748.71UniProt (Q586A1)
Pfam (PF02777)		Trypanosoma brucei bruceimS42
28BA
(Cr)		Sod_Fe_C domain-containing proteinpolymer43948590.41UniProt (Q585I1)
Pfam (PF02777)		Trypanosoma brucei bruceimS43
29CA
(Cv)		ECH_2 domain-containing proteinpolymer1211137899.01UniProt (Q383R4)
Pfam (PF16113)		Trypanosoma brucei bruceimS47
30DA
(DA)		mS48polymer1788201787.11UniProt (Q57UJ2)Trypanosoma brucei brucei
31EA
(DB)		mS49polymer1181137234.11UniProt (Q586P5)Trypanosoma brucei brucei
32FA
(DC)		mS50polymer1165131719.31UniProt (Q57YB5)Trypanosoma brucei brucei
33GA
(DD)		mS51polymer81295081.01UniProt (Q385L8)Trypanosoma brucei brucei
34HA
(DE)		mS52polymer74784938.21UniProt (Q386Q7)Trypanosoma brucei brucei
35IA
(DF)		mS53polymer66675338.91UniProt (Q38ET1)Trypanosoma brucei brucei
36JA
(DG)		mS54polymer63172046.01UniProt (Q57ZP8)Trypanosoma brucei brucei
37KA
(DH)		mS55polymer58166676.71UniProt (Q580V1)Trypanosoma brucei brucei
38LA
(DI)		mS56polymer40747306.81UniProt (Q587C2)Trypanosoma brucei brucei
39MA
(DJ)		mS57polymer39645956.31UniProt (Q584U8)Trypanosoma brucei brucei
40NA
(DK)		mS58polymer32435623.91UniProt (Q38BP1)Trypanosoma brucei brucei
41OA
(DL)		mS59polymer30735395.71UniProt (Q38BS2)Trypanosoma brucei brucei
42PA
(DM)		mS60polymer29434546.61UniProt (Q57XL2)Trypanosoma brucei brucei
43QA
(DN)		mS61polymer29333482.31UniProt (Q38D60)Trypanosoma brucei brucei
44RA
(DO)		mS62polymer28232068.11UniProt (Q383D1)Trypanosoma brucei brucei
45SA
(DP)		mS63polymer27431922.21UniProt (Q38F25)Trypanosoma brucei brucei
46TA
(DQ)		AKAP7_NLS domain-containing proteinpolymer26830742.21UniProt (Q382E8)
Pfam (PF10469)		Trypanosoma brucei bruceimS64
47UA
(DR)		mS65polymer27030617.41UniProt (Q57UA2)Trypanosoma brucei brucei
48VA
(DS)		mS66polymer26129960.21UniProt (Q388L7)
Pfam (PF14311)		Trypanosoma brucei brucei
49WA
(DT)		Rhodanese domain-containing proteinpolymer24730096.11UniProt (Q586G5)
Pfam (PF00581)		Trypanosoma brucei bruceimS67
50XA
(DU)		Ubiquitin-like domain-containing proteinpolymer22826472.81UniProt (Q582T9)
Pfam (PF00240)		Trypanosoma brucei brucei
51YA
(DV)		mS69polymer18321589.71UniProt (Q57UZ6)Trypanosoma brucei brucei
52ZA
(DW)		mS70polymer17921247.41UniProt (Q383N9)Trypanosoma brucei brucei
53AB
(DX)		mS71polymer16920093.21UniProt (Q383G5)Trypanosoma brucei brucei
54BB
(DY)		mS72polymer16319340.41UniProt (Q57YD4)Trypanosoma brucei brucei
55CB
(DZ)		mS73polymer9411360.91UniProt (Q587C4)Trypanosoma brucei brucei
56DB
(Da)		mS74polymer648203.41Trypanosoma brucei brucei
57EB
(F3)		mt-SAF3polymer966106621.71UniProt (Q38E61)Trypanosoma brucei brucei
58FB
(F6)		mt-SAF6polymer67676781.41Trypanosoma brucei brucei
59GB
(F7)		mt-SAF7polymer67976675.21UniProt (Q57UW6)Trypanosoma brucei brucei
60HB
(F9)		mt-SAF9polymer60869781.81UniProt (Q57YC0)Trypanosoma brucei brucei
61IB
(FO)		mt-SAF22polymer33439132.61UniProt (Q389F9)Trypanosoma brucei brucei
62JB
(Ff)		DNA photolyase, putativepolymer84895285.31UniProt (Q382U6)
Pfam (PF00875)
Pfam (PF03441)		Trypanosoma brucei bruceimt-SAF35
63KB
(Fg)		Acyl transferase-like proteinpolymer55060722.11UniProt (Q38DK4)
Pfam (PF00698)		Trypanosoma brucei bruceimt-SAF36
64LB
(Fh)		mt-SAF37polymer31837009.11UniProt (Q38A63)Trypanosoma brucei brucei
65MB
(Fi)		mt-SAF38polymer62969516.71UniProt (Q57ZP1)Trypanosoma brucei brucei
66NB
(IA)		Translation initiation factor IF-2, putativepolymer78787114.01UniProt (Q57WE3)
Pfam (PF00009)
Pfam (PF22042)		Trypanosoma brucei bruceimt-IF-2
67OB
(IB)		mt-SAF39polymer80389640.01UniProt (Q387Q6)Trypanosoma brucei brucei
68PB, VB
(U6, UJ)		Unkpolymer211805.22Trypanosoma brucei brucei
69QB
(U7)		Unk7polymer403422.21Trypanosoma brucei brucei
70RB
(UE)		UnkEpolymer534528.61Trypanosoma brucei brucei
71SB
(UF)		UnkFpolymer393337.11Trypanosoma brucei brucei
72TB
(UG)		UnkGpolymer131124.41Trypanosoma brucei brucei
73UB
(UI)		UnkIpolymer10869.11Trypanosoma brucei brucei
74WB
(UK)		UnkKpolymer3273.31Trypanosoma brucei brucei
75XB
(UL)		UnkLpolymer201720.11Trypanosoma brucei brucei
76AC, BC, DC, MC, YB...
(CA, CQ, Cg, IA)		MAGNESIUM IONnon-polymer24.36Chemie (MG)
PubChem (888)
77CC
(Cg)		ADENOSINE-5'-TRIPHOSPHATEnon-polymer507.21Chemie (ATP)
78EC, FC, HC, IC
(Cr, DA, DS)		ZINC IONnon-polymer65.44Chemie (ZN)
79GC
(DJ)		URIDINE 5'-TRIPHOSPHATEnon-polymer484.11Chemie (UTP)
80JC
(Ff)		FLAVIN-ADENINE DINUCLEOTIDEnon-polymer785.51Chemie (FAD)
81KC
(IA)		GUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
PubChem (136073927)
PubChem (135398619)
PubChem (135402030)
PubChem (135431654)
PubChem (135566337)
PubChem (135760556)
PubChem (136026707)
PubChem (136053418)
PubChem (136663964)
PubChem (136664748)
PubChem (136759848)
PubChem (136759849)
PubChem (136759850)
PubChem (136836636)
PubChem (136847074)
PubChem (172898537)
82LC
(IA)		PHOSPHATE IONnon-polymer95.01Chemie (PO4)
PubChem (1061)
83NC, OC
(Cg, IA)		waterwater18.05Chemie (HOH)
Sequence modifications
CA: 1 - 613 (GenBank: 13740)
CA: 614 - 621 (PDB: 7PUB)
CE: 1 - 435 (UniProt: Q38AX6)
PDBExternal DatabaseDetails
Arg 341Lys 341variant
CH: 1 - 282 (UniProt: Q388R7)
PDBExternal DatabaseDetails
Asn 74Ser 74variant
CI: 1 - 443 (UniProt: Q57W62)
PDBExternal DatabaseDetails
Ala 370Val 370variant
CJ: 1 - 817 (UniProt: Q57Z45)
PDBExternal DatabaseDetails
Leu 311Tyr 311variant
His 484Arg 484variant
Ser 488Asn 488variant
Arg 629Lys 629variant
CK: 1 - 326 (UniProt: Q389T7)
PDBExternal DatabaseDetails
Arg 3Gln 3variant
Unk 138Ile 138conflict
CQ: 1 - 307 (UniProt: Q38DP8)
PDBExternal DatabaseDetails
Ala 138Val 138variant
CR: 1 - 320 (UniProt: Q38AS2)
PDBExternal DatabaseDetails
Ile 8Val 8variant
Cd: 1 - 440 (UniProt: Q38DK6)
PDBExternal DatabaseDetails
Unk 299Gly 299conflict
Unk 364Gly 364conflict
Ck: 1 - 874 (UniProt: Q387C7)
PDBExternal DatabaseDetails
Ser 107Leu 107variant
Phe 144Leu 144variant
Tyr 253Phe 253variant
Glu 339Val 339variant
Gly 815Arg 815variant
Gly 871Glu 871variant
Cq: 1 - 263 (UniProt: Q586A1)
PDBExternal DatabaseDetails
Thr 48Ala 48variant
Met 167Val 167variant
Cr: 1 - 439 (UniProt: Q585I1)
PDBExternal DatabaseDetails
Lys 351Glu 351variant
Cv: 1 - 1211 (UniProt: Q383R4)
PDBExternal DatabaseDetails
Glu 1179Gly 1179variant
DA: 1 - 1788 (UniProt: Q57UJ2)
PDBExternal DatabaseDetails
Thr 1181Ile 1181variant
Ala 1333Val 1333variant
Arg 1700His 1700variant
Lys 1761Arg 1761variant
DB: 1 - 1181 (UniProt: Q586P5)
PDBExternal DatabaseDetails
Val 23Ala 23variant
Ile 359Thr 359variant
Gln 384His 384variant
Thr 402Ile 402variant
Thr 423Ala 423variant
Arg 586His 586variant
Arg 593Lys 593variant
Ser 647Gly 647variant
DC: 1 - 1165 (UniProt: Q57YB5)
PDBExternal DatabaseDetails
Ala 53Thr 53variant
Lys 365Glu 365variant
Thr 385Ala 385variant
Ile 405Val 405variant
Ser 641Pro 641variant
Lys 651Glu 651variant
Glu 731Asp 731variant
Gln 814His 814variant
Ala 1097Val 1097variant
Thr 1113Ile 1113variant
DD: 1 - 812 (UniProt: Q385L8)
PDBExternal DatabaseDetails
Pro 371Ser 371variant
Ala 599Val 599variant
DE: 1 - 747 (UniProt: Q386Q7)
PDBExternal DatabaseDetails
Unk 378Lys 378variant
Unk 384Thr 384variant
DF: 1 - 666 (UniProt: Q38ET1)
PDBExternal DatabaseDetails
Thr 18Ala 18variant
Asp 258Asn 258variant
Asn 372Asp 372variant
Asn 406Ser 406variant
Asp 510Gly 510variant
Ala 577Val 577variant
Unk 636Gly 636conflict
Lys 638Arg 638variant
DG: 1 - 631 (UniProt: Q57ZP8)
PDBExternal DatabaseDetails
Asn 428Ser 428variant
Gly 429Ser 429variant
DH: 1 - 581 (UniProt: Q580V1)
PDBExternal DatabaseDetails
His 191Gln 191variant
Pro 194Arg 194variant
Gly 488Ser 488variant
DI: 1 - 407 (UniProt: Q587C2)
PDBExternal DatabaseDetails
Glu 92Gly 92variant
Asp 116Glu 116variant
DK: 1 - 324 (UniProt: Q38BP1)
PDBExternal DatabaseDetails
Ser 61Pro 131variant
Gly 257Ser 327variant
DL: 1 - 307 (UniProt: Q38BS2)
PDBExternal DatabaseDetails
Thr 274Ala 274variant
DM: 1 - 294 (UniProt: Q57XL2)
PDBExternal DatabaseDetails
Phe 69Tyr 69variant
Asn 97Ser 97variant
Ser 138Pro 138variant
Ala 173Thr 173variant
Ala 206Thr 206variant
DN: 1 - 293 (UniProt: Q38D60)
PDBExternal DatabaseDetails
Gly 51Ser 51variant
DP: 1 - 274 (UniProt: Q38F25)
PDBExternal DatabaseDetails
His 3Arg 3variant
DR: 1 - 270 (UniProt: Q57UA2)
PDBExternal DatabaseDetails
Gly 65Ser 65variant
Gly 94Glu 94variant
Pro 128Ser 128variant
Arg 229Gln 229variant
DU: 1 - 228 (UniProt: Q582T9)
PDBExternal DatabaseDetails
Ile 119Leu 119variant
Ile 152Val 152variant
DV: 1 - 183 (UniProt: Q57UZ6)
PDBExternal DatabaseDetails
Ala 163Thr 163variant
DW: 1 - 179 (UniProt: Q383N9)
PDBExternal DatabaseDetails
Thr 74Met 74variant
DY: 1 - 163 (UniProt: Q57YD4)
PDBExternal DatabaseDetails
His 34Asp 34variant
F3: 1 - 966 (UniProt: Q38E61)
PDBExternal DatabaseDetails
Thr 44Ala 44variant
Val 190Ile 190variant
Ala 303Ser 303variant
Asp 418Asn 418variant
F7: 1 - 679 (UniProt: Q57UW6)
PDBExternal DatabaseDetails
Ile 36Thr 36variant
Glu 470Lys 470variant
Val 474Ala 474variant
F9: 1 - 608 (UniProt: Q57YC0)
PDBExternal DatabaseDetails
Ala 117Ser 117variant
Tyr 145His 145variant
Lys 316Glu 316variant
Gly 412Val 412variant
Val 449Ala 449variant
Gly 537Ser 537variant
Ff: 1 - 848 (UniProt: Q382U6)
PDBExternal DatabaseDetails
Ala 109Val 109variant
Unk 127Tyr 127conflict
Gln 138Arg 138variant
Cys 200Ser 200variant
Ala 319Thr 319variant
Asn 334Thr 334variant
Ile 350Thr 350variant
Ala 362Val 362variant
Thr 844Ser 844variant
Fg: 1 - 550 (UniProt: Q38DK4)
PDBExternal DatabaseDetails
Lys 90Arg 90variant
Val 152Leu 152variant
Ile 159Val 159variant
Met 363Arg 363variant
Unk 399Glu 399conflict
Lys 525Arg 525variant
Fi: 1 - 629 (UniProt: Q57ZP1)
PDBExternal DatabaseDetails
Thr 35Ser 35variant
Gly 69Ser 69variant
Pro 185His 185variant
IA: 1 - 787 (UniProt: Q57WE3)
PDBExternal DatabaseDetails
Lys 373Glu 373variant
Ile 451Val 451variant
Asn 584Ser 584variant
Asp 679Val 679variant
IB: 1 - 803 (UniProt: Q387Q6)
PDBExternal DatabaseDetails
Lys 136Glu 136variant
Asp 226Asn 226variant
Cys 237Ser 237variant
Thr 259Arg 259variant
Glu 268Lys 268variant
Cys 275Tyr 275variant
Thr 312Ser 312variant
Asp 459Ala 459variant
His 572Arg 572variant
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains76
Total formula weight3614705.5
Non-Polymers*Number of molecules15
Total formula weight2722.5
All*Total formula weight3617428.0
*Water molecules are not included.

251801

PDB entries from 2026-04-08

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