Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

7PUB

Late assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	CA	9S rRNA	polymer	621	198441.4	1	GenBank (13740)	Trypanosoma brucei brucei
2	CC	uS3m	polymer	74	9070.9	1		Trypanosoma brucei brucei
3	CE	Ribosomal_S5_C domain-containing protein	polymer	435	50147.4	1	UniProt (Q38AX6) Pfam (PF03719) In PDB	Trypanosoma brucei brucei	uS5m
4	CF	bS6m	polymer	160	18861.5	1	UniProt (Q38BW5) In PDB	Trypanosoma brucei brucei
5	CH	30S ribosomal protein S8, putative	polymer	282	32766.5	1	UniProt (Q388R7) Pfam (PF00410) In PDB	Trypanosoma brucei brucei	uS8m
6	CI	uS9m	polymer	443	50201.0	1	UniProt (Q57W62) Pfam (PF00380) In PDB	Trypanosoma brucei brucei
7	CJ	LysM domain-containing protein	polymer	817	94321.1	1	UniProt (Q57Z45) Pfam (PF01476) In PDB	Trypanosoma brucei brucei	uS10m
8	CK	uS11m	polymer	326	37925.9	1	UniProt (Q389T7) In PDB	Trypanosoma brucei brucei
9	CL	uS12m	polymer	87	10421.6	1		Trypanosoma brucei brucei
10	CN	uS14m	polymer	166	19900.0	1	UniProt (Q580I0) In PDB	Trypanosoma brucei brucei
11	CO	uS15m	polymer	429	50401.2	1	UniProt (Q4GZ99) In PDB	Trypanosoma brucei brucei
12	CP	bS16m	polymer	188	22077.8	1	UniProt (Q384N9) In PDB	Trypanosoma brucei brucei
13	CQ	30S Ribosomal protein S17, putative	polymer	307	35632.7	1	UniProt (Q38DP8) Pfam (PF00366) In PDB	Trypanosoma brucei brucei	uS17m
14	CR	bS18m	polymer	320	36988.7	1	UniProt (Q38AS2) In PDB	Trypanosoma brucei brucei
15	CS	uS19m	polymer	244	28364.6	1		Trypanosoma brucei brucei
16	CU	bS21m	polymer	193	23087.9	1	UniProt (Q580M9) In PDB	Trypanosoma brucei brucei
17	Ca	mS22	polymer	602	73064.1	1	UniProt (Q38DR3) In PDB	Trypanosoma brucei brucei
18	Cb	mS23	polymer	325	36869.6	1		Trypanosoma brucei brucei
19	Cd	mS26	polymer	440	51192.8	1	UniProt (Q38DK6) In PDB	Trypanosoma brucei brucei
20	Cg	mS29	polymer	498	57048.8	1		Trypanosoma brucei brucei
21	Ci	mS33	polymer	181	21244.1	1	UniProt (Q57WW0) In PDB	Trypanosoma brucei brucei
22	Cj	mS34	polymer	257	28728.2	1	UniProt (Q57UK0) In PDB	Trypanosoma brucei brucei
23	Ck	mS35	polymer	874	98277.6	1	UniProt (Q387C7) In PDB	Trypanosoma brucei brucei
24	Cm	mS37	polymer	215	24757.9	1	UniProt (Q38C96) In PDB	Trypanosoma brucei brucei
25	Cn	mS38	polymer	250	28240.6	1	UniProt (Q57VQ9) In PDB	Trypanosoma brucei brucei
26	Cp	Protein FYV4, mitochondrial	polymer	187	22421.5	1	UniProt (Q389L3) In PDB	Trypanosoma brucei brucei	mS41
27	Cq	Superoxide dismutase, putative	polymer	263	29748.7	1	UniProt (Q586A1) Pfam (PF02777) In PDB	Trypanosoma brucei brucei	mS42
28	Cr	Sod_Fe_C domain-containing protein	polymer	439	48590.4	1	UniProt (Q585I1) Pfam (PF02777) In PDB	Trypanosoma brucei brucei	mS43
29	Cv	ECH_2 domain-containing protein	polymer	1211	137899.0	1	UniProt (Q383R4) Pfam (PF16113) In PDB	Trypanosoma brucei brucei	mS47
30	DA	mS48	polymer	1788	201787.1	1	UniProt (Q57UJ2) In PDB	Trypanosoma brucei brucei
31	DB	mS49	polymer	1181	137234.1	1	UniProt (Q586P5) In PDB	Trypanosoma brucei brucei
32	DC	mS50	polymer	1165	131719.3	1	UniProt (Q57YB5) In PDB	Trypanosoma brucei brucei
33	DD	mS51	polymer	812	95081.0	1	UniProt (Q385L8) In PDB	Trypanosoma brucei brucei
34	DE	mS52	polymer	747	84938.2	1	UniProt (Q386Q7) In PDB	Trypanosoma brucei brucei
35	DF	mS53	polymer	666	75338.9	1	UniProt (Q38ET1) In PDB	Trypanosoma brucei brucei
36	DG	mS54	polymer	631	72046.0	1	UniProt (Q57ZP8) In PDB	Trypanosoma brucei brucei
37	DH	mS55	polymer	581	66676.7	1	UniProt (Q580V1) In PDB	Trypanosoma brucei brucei
38	DI	mS56	polymer	407	47306.8	1	UniProt (Q587C2) In PDB	Trypanosoma brucei brucei
39	DJ	mS57	polymer	396	45956.3	1	UniProt (Q584U8) In PDB	Trypanosoma brucei brucei
40	DK	mS58	polymer	324	35623.9	1	UniProt (Q38BP1) In PDB	Trypanosoma brucei brucei
41	DL	mS59	polymer	307	35395.7	1	UniProt (Q38BS2) In PDB	Trypanosoma brucei brucei
42	DM	mS60	polymer	294	34546.6	1	UniProt (Q57XL2) In PDB	Trypanosoma brucei brucei
43	DN	mS61	polymer	293	33482.3	1	UniProt (Q38D60) In PDB	Trypanosoma brucei brucei
44	DO	mS62	polymer	282	32068.1	1	UniProt (Q383D1) In PDB	Trypanosoma brucei brucei
45	DP	mS63	polymer	274	31922.2	1	UniProt (Q38F25) In PDB	Trypanosoma brucei brucei
46	DQ	AKAP7_NLS domain-containing protein	polymer	268	30742.2	1	UniProt (Q382E8) Pfam (PF10469) In PDB	Trypanosoma brucei brucei	mS64
47	DR	mS65	polymer	270	30617.4	1	UniProt (Q57UA2) In PDB	Trypanosoma brucei brucei
48	DS	mS66	polymer	261	29960.2	1	UniProt (Q388L7) Pfam (PF14311) In PDB	Trypanosoma brucei brucei
49	DT	Rhodanese domain-containing protein	polymer	247	30096.1	1	UniProt (Q586G5) Pfam (PF00581) In PDB	Trypanosoma brucei brucei	mS67
50	DU	Ubiquitin-like domain-containing protein	polymer	228	26472.8	1	UniProt (Q582T9) Pfam (PF00240) In PDB	Trypanosoma brucei brucei
51	DV	mS69	polymer	183	21589.7	1	UniProt (Q57UZ6) In PDB	Trypanosoma brucei brucei
52	DW	mS70	polymer	179	21247.4	1	UniProt (Q383N9) In PDB	Trypanosoma brucei brucei
53	DX	mS71	polymer	169	20093.2	1	UniProt (Q383G5) In PDB	Trypanosoma brucei brucei
54	DY	mS72	polymer	163	19340.4	1	UniProt (Q57YD4) In PDB	Trypanosoma brucei brucei
55	DZ	mS73	polymer	94	11360.9	1	UniProt (Q587C4) In PDB	Trypanosoma brucei brucei
56	Da	mS74	polymer	64	8203.4	1		Trypanosoma brucei brucei
57	F3	mt-SAF3	polymer	966	106621.7	1	UniProt (Q38E61) In PDB	Trypanosoma brucei brucei
58	F6	mt-SAF6	polymer	676	76781.4	1		Trypanosoma brucei brucei
59	F7	mt-SAF7	polymer	679	76675.2	1	UniProt (Q57UW6) In PDB	Trypanosoma brucei brucei
60	F9	mt-SAF9	polymer	608	69781.8	1	UniProt (Q57YC0) In PDB	Trypanosoma brucei brucei
61	FO	mt-SAF22	polymer	334	39132.6	1	UniProt (Q389F9) In PDB	Trypanosoma brucei brucei
62	Ff	DNA photolyase, putative	polymer	848	95285.3	1	UniProt (Q382U6) Pfam (PF00875) Pfam (PF03441) In PDB	Trypanosoma brucei brucei	mt-SAF35
63	Fg	Acyl transferase-like protein	polymer	550	60722.1	1	UniProt (Q38DK4) Pfam (PF00698) In PDB	Trypanosoma brucei brucei	mt-SAF36
64	Fh	mt-SAF37	polymer	318	37009.1	1	UniProt (Q38A63) In PDB	Trypanosoma brucei brucei
65	Fi	mt-SAF38	polymer	629	69516.7	1	UniProt (Q57ZP1) In PDB	Trypanosoma brucei brucei
66	IA	Translation initiation factor IF-2, putative	polymer	787	87114.0	1	UniProt (Q57WE3) Pfam (PF00009) Pfam (PF22042) In PDB	Trypanosoma brucei brucei	mt-IF-2
67	IB	mt-SAF39	polymer	803	89640.0	1	UniProt (Q387Q6) In PDB	Trypanosoma brucei brucei
68	U6, UJ	Unk	polymer	21	1805.2	2		Trypanosoma brucei brucei
69	U7	Unk7	polymer	40	3422.2	1		Trypanosoma brucei brucei
70	UE	UnkE	polymer	53	4528.6	1		Trypanosoma brucei brucei
71	UF	UnkF	polymer	39	3337.1	1		Trypanosoma brucei brucei
72	UG	UnkG	polymer	13	1124.4	1		Trypanosoma brucei brucei
73	UI	UnkI	polymer	10	869.1	1		Trypanosoma brucei brucei
74	UK	UnkK	polymer	3	273.3	1		Trypanosoma brucei brucei
75	UL	UnkL	polymer	20	1720.1	1		Trypanosoma brucei brucei
76	CA, CQ, Cg, IA	MAGNESIUM ION	non-polymer		24.3	6	Chemie (MG)
77	Cg	ADENOSINE-5'-TRIPHOSPHATE	non-polymer		507.2	1	Chemie (ATP)
78	Cr, DA, DS	ZINC ION	non-polymer		65.4	4	Chemie (ZN)
79	DJ	URIDINE 5'-TRIPHOSPHATE	non-polymer		484.1	1	Chemie (UTP)
80	Ff	FLAVIN-ADENINE DINUCLEOTIDE	non-polymer		785.5	1	Chemie (FAD)
81	IA	GUANOSINE-5'-DIPHOSPHATE	non-polymer		443.2	1	Chemie (GDP)
82	IA	PHOSPHATE ION	non-polymer		95.0	1	Chemie (PO4)
83		water	water		18.0	5	Chemie (HOH)

Sequence modifications

CA: 1 - 613 (GenBank: 13740)
CA: 614 - 621 (PDB: 7PUB)
CE: 1 - 435 (UniProt: Q38AX6)

PDB	External Database	Details
Arg 341	Lys 341	variant

CH: 1 - 282 (UniProt: Q388R7)

PDB	External Database	Details
Asn 74	Ser 74	variant

CI: 1 - 443 (UniProt: Q57W62)

PDB	External Database	Details
Ala 370	Val 370	variant

CJ: 1 - 817 (UniProt: Q57Z45)

PDB	External Database	Details
Leu 311	Tyr 311	variant
His 484	Arg 484	variant
Ser 488	Asn 488	variant
Arg 629	Lys 629	variant

CK: 1 - 326 (UniProt: Q389T7)

PDB	External Database	Details
Arg 3	Gln 3	variant
Unk 138	Ile 138	conflict

CQ: 1 - 307 (UniProt: Q38DP8)

PDB	External Database	Details
Ala 138	Val 138	variant

CR: 1 - 320 (UniProt: Q38AS2)

PDB	External Database	Details
Ile 8	Val 8	variant

Cd: 1 - 440 (UniProt: Q38DK6)

PDB	External Database	Details
Unk 299	Gly 299	conflict
Unk 364	Gly 364	conflict

Ck: 1 - 874 (UniProt: Q387C7)

PDB	External Database	Details
Ser 107	Leu 107	variant
Phe 144	Leu 144	variant
Tyr 253	Phe 253	variant
Glu 339	Val 339	variant
Gly 815	Arg 815	variant
Gly 871	Glu 871	variant

Cq: 1 - 263 (UniProt: Q586A1)

PDB	External Database	Details
Thr 48	Ala 48	variant
Met 167	Val 167	variant

Cr: 1 - 439 (UniProt: Q585I1)

PDB	External Database	Details
Lys 351	Glu 351	variant

Cv: 1 - 1211 (UniProt: Q383R4)

PDB	External Database	Details
Glu 1179	Gly 1179	variant

DA: 1 - 1788 (UniProt: Q57UJ2)

PDB	External Database	Details
Thr 1181	Ile 1181	variant
Ala 1333	Val 1333	variant
Arg 1700	His 1700	variant
Lys 1761	Arg 1761	variant

DB: 1 - 1181 (UniProt: Q586P5)

PDB	External Database	Details
Val 23	Ala 23	variant
Ile 359	Thr 359	variant
Gln 384	His 384	variant
Thr 402	Ile 402	variant
Thr 423	Ala 423	variant
Arg 586	His 586	variant
Arg 593	Lys 593	variant
Ser 647	Gly 647	variant

DC: 1 - 1165 (UniProt: Q57YB5)

PDB	External Database	Details
Ala 53	Thr 53	variant
Lys 365	Glu 365	variant
Thr 385	Ala 385	variant
Ile 405	Val 405	variant
Ser 641	Pro 641	variant
Lys 651	Glu 651	variant
Glu 731	Asp 731	variant
Gln 814	His 814	variant
Ala 1097	Val 1097	variant
Thr 1113	Ile 1113	variant

DD: 1 - 812 (UniProt: Q385L8)

PDB	External Database	Details
Pro 371	Ser 371	variant
Ala 599	Val 599	variant

DE: 1 - 747 (UniProt: Q386Q7)

PDB	External Database	Details
Unk 378	Lys 378	variant
Unk 384	Thr 384	variant

DF: 1 - 666 (UniProt: Q38ET1)

PDB	External Database	Details
Thr 18	Ala 18	variant
Asp 258	Asn 258	variant
Asn 372	Asp 372	variant
Asn 406	Ser 406	variant
Asp 510	Gly 510	variant
Ala 577	Val 577	variant
Unk 636	Gly 636	conflict
Lys 638	Arg 638	variant

DG: 1 - 631 (UniProt: Q57ZP8)

PDB	External Database	Details
Asn 428	Ser 428	variant
Gly 429	Ser 429	variant

DH: 1 - 581 (UniProt: Q580V1)

PDB	External Database	Details
His 191	Gln 191	variant
Pro 194	Arg 194	variant
Gly 488	Ser 488	variant

DI: 1 - 407 (UniProt: Q587C2)

PDB	External Database	Details
Glu 92	Gly 92	variant
Asp 116	Glu 116	variant

DK: 1 - 324 (UniProt: Q38BP1)

PDB	External Database	Details
Ser 61	Pro 131	variant
Gly 257	Ser 327	variant

DL: 1 - 307 (UniProt: Q38BS2)

PDB	External Database	Details
Thr 274	Ala 274	variant

DM: 1 - 294 (UniProt: Q57XL2)

PDB	External Database	Details
Phe 69	Tyr 69	variant
Asn 97	Ser 97	variant
Ser 138	Pro 138	variant
Ala 173	Thr 173	variant
Ala 206	Thr 206	variant

DN: 1 - 293 (UniProt: Q38D60)

PDB	External Database	Details
Gly 51	Ser 51	variant

DP: 1 - 274 (UniProt: Q38F25)

PDB	External Database	Details
His 3	Arg 3	variant

DR: 1 - 270 (UniProt: Q57UA2)

PDB	External Database	Details
Gly 65	Ser 65	variant
Gly 94	Glu 94	variant
Pro 128	Ser 128	variant
Arg 229	Gln 229	variant

DU: 1 - 228 (UniProt: Q582T9)

PDB	External Database	Details
Ile 119	Leu 119	variant
Ile 152	Val 152	variant

DV: 1 - 183 (UniProt: Q57UZ6)

PDB	External Database	Details
Ala 163	Thr 163	variant

DW: 1 - 179 (UniProt: Q383N9)

PDB	External Database	Details
Thr 74	Met 74	variant

DY: 1 - 163 (UniProt: Q57YD4)

PDB	External Database	Details
His 34	Asp 34	variant

F3: 1 - 966 (UniProt: Q38E61)

PDB	External Database	Details
Thr 44	Ala 44	variant
Val 190	Ile 190	variant
Ala 303	Ser 303	variant
Asp 418	Asn 418	variant

F7: 1 - 679 (UniProt: Q57UW6)

PDB	External Database	Details
Ile 36	Thr 36	variant
Glu 470	Lys 470	variant
Val 474	Ala 474	variant

F9: 1 - 608 (UniProt: Q57YC0)

PDB	External Database	Details
Ala 117	Ser 117	variant
Tyr 145	His 145	variant
Lys 316	Glu 316	variant
Gly 412	Val 412	variant
Val 449	Ala 449	variant
Gly 537	Ser 537	variant

Ff: 1 - 848 (UniProt: Q382U6)

PDB	External Database	Details
Ala 109	Val 109	variant
Unk 127	Tyr 127	conflict
Gln 138	Arg 138	variant
Cys 200	Ser 200	variant
Ala 319	Thr 319	variant
Asn 334	Thr 334	variant
Ile 350	Thr 350	variant
Ala 362	Val 362	variant
Thr 844	Ser 844	variant

Fg: 1 - 550 (UniProt: Q38DK4)

PDB	External Database	Details
Lys 90	Arg 90	variant
Val 152	Leu 152	variant
Ile 159	Val 159	variant
Met 363	Arg 363	variant
Unk 399	Glu 399	conflict
Lys 525	Arg 525	variant

Fi: 1 - 629 (UniProt: Q57ZP1)

PDB	External Database	Details
Thr 35	Ser 35	variant
Gly 69	Ser 69	variant
Pro 185	His 185	variant

IA: 1 - 787 (UniProt: Q57WE3)

PDB	External Database	Details
Lys 373	Glu 373	variant
Ile 451	Val 451	variant
Asn 584	Ser 584	variant
Asp 679	Val 679	variant

IB: 1 - 803 (UniProt: Q387Q6)

PDB	External Database	Details
Lys 136	Glu 136	variant
Asp 226	Asn 226	variant
Cys 237	Ser 237	variant
Thr 259	Arg 259	variant
Glu 268	Lys 268	variant
Cys 275	Tyr 275	variant
Thr 312	Ser 312	variant
Asp 459	Ala 459	variant
His 572	Arg 572	variant

Sequence viewer

Contents of the asymmetric unit

Polymers	Number of chains	76
Polymers	Total formula weight	3614705.5
Non-Polymers*	Number of molecules	15
Non-Polymers*	Total formula weight	2722.5
All*	Total formula weight	3617428.0

*Water molecules are not included.

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)