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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7PUA

Middle assembly intermediate of the Trypanosoma brucei mitoribosomal small subunit

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1CA9S rRNApolymer621198441.41GenBank (13740)Trypanosoma brucei brucei
2CB9S rRNApolymer3919.61Trypanosoma brucei brucei
3CCuS3mpolymer749070.91Trypanosoma brucei brucei
4CERibosomal_S5_C domain-containing proteinpolymer43550147.41UniProt (D0A335)
Pfam (PF03719)
In PDB		Trypanosoma brucei brucei
5CFbS6mpolymer16018861.51UniProt (Q38BW5)
In PDB		Trypanosoma brucei brucei
6CH30S ribosomal protein S8, putativepolymer28232766.51UniProt (C9ZZU9)
Pfam (PF00410)
In PDB		Trypanosoma brucei brucei
7CIuS9mpolymer44350201.01UniProt (Q57W62)
Pfam (PF00380)
In PDB		Trypanosoma brucei brucei
8CJLysM domain-containing proteinpolymer81794321.11UniProt (C9ZPU0)
Pfam (PF01476)
In PDB		Trypanosoma brucei brucei
9CKuS11mpolymer32637925.91UniProt (Q389T7)
In PDB		Trypanosoma brucei brucei
10CLuS12mpolymer8710421.61Trypanosoma brucei brucei
11CNuS14mpolymer16619900.01UniProt (Q580I0)
In PDB		Trypanosoma brucei brucei
12COuS15mpolymer42950401.21UniProt (Q4GZ99)
In PDB		Trypanosoma brucei brucei
13CPbS16mpolymer18822077.81UniProt (Q384N9)
In PDB		Trypanosoma brucei brucei
14CQ30S Ribosomal protein S17, putativepolymer30735632.71UniProt (C9ZYU9)
Pfam (PF00366)
In PDB		Trypanosoma brucei brucei
15CRbS18mpolymer32036988.71UniProt (D0A3A4)
In PDB		Trypanosoma brucei brucei
16CSuS19mpolymer24428364.61UniProt (A0A3L6L621)
In PDB		Trypanosoma brucei brucei
17CUbS21mpolymer19323087.91UniProt (Q580M9)
In PDB		Trypanosoma brucei brucei
18CamS22polymer60273064.11UniProt (Q38DR3)
In PDB		Trypanosoma brucei brucei
19CbmS23polymer32536869.61UniProt (C9ZNU0)
In PDB		Trypanosoma brucei brucei
20CdmS26polymer44051192.81UniProt (Q38DK6)
In PDB		Trypanosoma brucei brucei
21CgmS29polymer49857048.81UniProt (Q585C2)
Pfam (PF10236)
In PDB		Trypanosoma brucei brucei
22CimS33polymer18121244.11UniProt (Q57WW0)
In PDB		Trypanosoma brucei brucei
23CjmS34polymer25728728.21UniProt (Q57UK0)
In PDB		Trypanosoma brucei brucei
24CkmS35polymer87498277.61UniProt (Q387C7)
In PDB		Trypanosoma brucei brucei
25CmmS37polymer21524757.91UniProt (Q38C96)
In PDB		Trypanosoma brucei brucei
26CnmS38polymer25028240.61UniProt (Q57VQ9)
In PDB		Trypanosoma brucei brucei
27CpProtein FYV4, mitochondrialpolymer18722421.51UniProt (Q389L3)
In PDB		Trypanosoma brucei brucei
28DBmS49polymer1181137234.11UniProt (C9ZJE4)
In PDB		Trypanosoma brucei brucei
29DCmS50polymer1165131719.31UniProt (A0A3L6L3Q2)
In PDB		Trypanosoma brucei brucei
30DDmS51polymer81293661.41UniProt (D0A752)
In PDB		Trypanosoma brucei brucei
31DEmS52polymer74784938.21UniProt (Q386Q7)
In PDB		Trypanosoma brucei brucei
32DFmS53polymer66675338.91UniProt (C9ZXX4)
In PDB		Trypanosoma brucei brucei
33DGmS54polymer63172046.01UniProt (C9ZNY4)
In PDB		Trypanosoma brucei brucei
34DHmS55polymer58166676.71UniProt (A0A3L6LGC8)
In PDB		Trypanosoma brucei brucei
35DImS56polymer40747306.81UniProt (A0A3L6L6C6)
In PDB		Trypanosoma brucei brucei
36DJmS57polymer39645956.31UniProt (Q584U8)
In PDB		Trypanosoma brucei brucei
37DKmS58polymer32435651.91UniProt (A0A3L6L3U6)
In PDB		Trypanosoma brucei brucei
38DLmS59polymer30735395.71UniProt (D0A232)
In PDB		Trypanosoma brucei brucei
39DOmS62polymer28232068.11UniProt (Q383D1)
In PDB		Trypanosoma brucei brucei
40DPmS63polymer27431922.21UniProt (C9ZXR0)
In PDB		Trypanosoma brucei brucei
41DRmS65polymer27030617.41UniProt (C9ZPP1)
In PDB		Trypanosoma brucei brucei
42DTRhodanese domain-containing proteinpolymer24730096.11UniProt (Q586G5)
Pfam (PF00581)
In PDB		Trypanosoma brucei brucei
43DUUbiquitin-like domain-containing proteinpolymer22826472.81UniProt (C9ZKC1)
Pfam (PF00240)
In PDB		Trypanosoma brucei brucei
44DVmS69polymer18321589.71UniProt (Q57UZ6)
In PDB		Trypanosoma brucei brucei
45DWmS70polymer17921247.41UniProt (D0A8P6)
In PDB		Trypanosoma brucei brucei
46DXmS71polymer16920093.21UniProt (Q383G5)
In PDB		Trypanosoma brucei brucei
47DYmS72polymer16319340.41UniProt (Q57YD4)
In PDB		Trypanosoma brucei brucei
48DZmS73polymer9411360.91UniProt (Q587C4)
In PDB		Trypanosoma brucei brucei
49DamS74polymer648203.41UniProt (A0A3L6KY67)
In PDB		Trypanosoma brucei brucei
50F2PPR_long domain-containing proteinpolymer1024116189.51UniProt (C9ZIL7)
Pfam (PF13812)
Pfam (PF01535)
Pfam (PF17177)
In PDB		Trypanosoma brucei brucei
51F3mt-SAF3polymer966106621.71UniProt (Q38E61)
In PDB		Trypanosoma brucei brucei
52F5mt-SAF5polymer75486949.41UniProt (D0AAF7)
In PDB		Trypanosoma brucei brucei
53F6DUF4460 domain-containing proteinpolymer67676781.41UniProt (Q38FQ8)
Pfam (PF14687)
In PDB		Trypanosoma brucei brucei
54F7mt-SAF7polymer67976675.21UniProt (Q57UW6)
In PDB		Trypanosoma brucei brucei
55F9mt-SAF9polymer60769652.71UniProt (C9ZSL5)
In PDB		Trypanosoma brucei brucei
56FM, FNmt-SAF21polymer37039638.82UniProt (C9ZJW2)
Pfam (PF03446)
Pfam (PF14833)
In PDB		Trypanosoma brucei brucei
57FOmt-SAF22polymer33439132.61UniProt (Q389F9)
In PDB		Trypanosoma brucei brucei
58FPmt-SAF23polymer34938240.21UniProt (D0A963)
In PDB		Trypanosoma brucei brucei
59FWLMWPc domain-containing proteinpolymer26330538.61UniProt (Q38FI3)
Pfam (PF01451)
In PDB		Trypanosoma brucei brucei
60FXmt-SAF27polymer23926936.71UniProt (Q57YK5)
Pfam (PF13812)
In PDB		Trypanosoma brucei brucei
61FZmt-SAF29polymer17820048.51UniProt (A0A3L6KWY8)
In PDB		Trypanosoma brucei brucei
62Fbmt-SAF31polymer15117673.51UniProt (Q581U4)
In PDB		Trypanosoma brucei brucei
63FcAcyl carrier proteinpolymer14816550.81UniProt (Q57WW9)
Pfam (PF00550)
In PDB		Trypanosoma brucei brucei
64FdDUF4379 domain-containing proteinpolymer14316291.11UniProt (Q581T4)
Pfam (PF14311)
In PDB		Trypanosoma brucei brucei
65FfDNA photolyase, putativepolymer84895285.31UniProt (D0A9A9)
Pfam (PF00875)
Pfam (PF03441)
In PDB		Trypanosoma brucei brucei
66FgAcyl transferase-like protein, putativepolymer55060722.11UniProt (C9ZYZ4)
Pfam (PF00698)
In PDB		Trypanosoma brucei brucei
67Fhmt-SAF37polymer31837009.11UniProt (Q38A63)
In PDB		Trypanosoma brucei brucei
68Fimt-SAF38polymer62969516.71UniProt (C9ZNX5)
In PDB		Trypanosoma brucei brucei
69IATranslation initiation factor IF-2, putativepolymer78787114.01UniProt (C9ZSN7)
Pfam (PF00009)
Pfam (PF22042)
In PDB		Trypanosoma brucei brucei
70IBmt-SAF39polymer80389640.01UniProt (D0A0V4)
In PDB		Trypanosoma brucei brucei
71U8Unk8polymer302571.21Trypanosoma brucei brucei
72UCUnkCpolymer9784.01Trypanosoma brucei brucei
73UDUnkDpolymer131224.51Trypanosoma brucei brucei
74UFUnkFpolymer363081.81Trypanosoma brucei brucei
75UGUnkGpolymer151459.61Trypanosoma brucei brucei
76UIUnkIpolymer6528.61Trypanosoma brucei brucei
77UKUnkKpolymer242060.51Trypanosoma brucei brucei
78UM, UN, UQUnkpolymer8698.93Trypanosoma brucei brucei
79UPUnkPpolymer322741.41Trypanosoma brucei brucei
80UaUnkapolymer10869.11Trypanosoma brucei brucei
81UgUnkgpolymer27123081.31Trypanosoma brucei brucei
82CA, CQ, Cg, IAMAGNESIUM IONnon-polymer24.37Chemie (MG)
83CgADENOSINE-5'-TRIPHOSPHATEnon-polymer507.21Chemie (ATP)
84FW, IAPHOSPHATE IONnon-polymer95.02Chemie (PO4)
85FcS-(2-{[N-(2-HYDROXY-4-{[HYDROXY(OXIDO)PHOSPHINO]OXY}-3,3-DIMETHYLBUTANOYL)-BETA-ALANYL]AMINO}ETHYL) DECANETHIOATEnon-polymer496.61Chemie (PM8)
86FdZINC IONnon-polymer65.41Chemie (ZN)
87FfDIHYDROFLAVINE-ADENINE DINUCLEOTIDEnon-polymer787.61Chemie (FDA)
88IAGUANOSINE-5'-DIPHOSPHATEnon-polymer443.21Chemie (GDP)
89waterwater18.05Chemie (HOH)
Sequence modifications
CA: 1 - 613 (GenBank: 13740)
PDBExternal DatabaseDetails
U 614-expression tag
U 615-expression tag
U 616-expression tag
U 617-expression tag
U 618-expression tag
U 619-expression tag
U 620-expression tag
U 621-expression tag
CI: 1 - 443 (UniProt: Q57W62)
PDBExternal DatabaseDetails
Ala 370Val 370conflict
CJ: 1 - 817 (UniProt: C9ZPU0)
PDBExternal DatabaseDetails
Ser 488Asn 488conflict
CK: 1 - 326 (UniProt: Q389T7)
PDBExternal DatabaseDetails
Arg 3Gln 3conflict
Unk 138Ile 138conflict
CS: -71 - 172 (UniProt: A0A3L6L621)
PDBExternal DatabaseDetails
Ile -11Asn 61conflict
Val -10Cys 62conflict
Tyr -9Leu 63conflict
Phe -8Leu 64conflict
His -7Pro 65conflict
Cys -6Leu 66conflict
Cys -5Leu 67conflict
Thr -4Tyr 68conflict
Arg -3Glu 69conflict
Lys -2Glu 70conflict
-Val 72deletion
-Arg 73deletion
Cb: 1 - 311 (UniProt: C9ZNU0)
PDBExternal DatabaseDetails
Gly 302Arg 302conflict
Unk 312-expression tag
Cys 313-expression tag
Ser 314-expression tag
Arg 315-expression tag
Asp 316-expression tag
Gly 317-expression tag
Phe 318-expression tag
Ala 319-expression tag
Leu 320-expression tag
Met 321-expression tag
Lys 322-expression tag
Ala 323-expression tag
Asn 324-expression tag
Lys 325-expression tag
Cd: 1 - 440 (UniProt: Q38DK6)
PDBExternal DatabaseDetails
Unk 299Gly 299conflict
Unk 364Gly 364conflict
Cg: 1 - 497 (UniProt: Q585C2)
PDBExternal DatabaseDetails
Val 181Ala 181conflict
Arg 498-expression tag
Ck: 1 - 874 (UniProt: Q387C7)
PDBExternal DatabaseDetails
Ser 107Leu 107conflict
Phe 144Leu 144conflict
Tyr 253Phe 253conflict
Glu 339Val 339conflict
Gly 815Arg 815conflict
Gly 871Glu 871conflict
DB: 1 - 1181 (UniProt: C9ZJE4)
PDBExternal DatabaseDetails
Ile 359Thr 359conflict
DD: 18 - 812 (UniProt: D0A752)
PDBExternal DatabaseDetails
Unk 1-expression tag
Unk 2-expression tag
Unk 3-expression tag
Unk 4-expression tag
Unk 5-expression tag
Unk 6-expression tag
Unk 7-expression tag
Unk 8-expression tag
Unk 9-expression tag
Unk 10-expression tag
Unk 11-expression tag
Unk 12-expression tag
Unk 13-expression tag
Unk 14-expression tag
Unk 15-expression tag
Unk 16-expression tag
Unk 17-expression tag
Unk 26Arg 26conflict
Unk 27Met 27conflict
Unk 28Met 28conflict
Unk 29Arg 29conflict
Unk 30Ala 30conflict
Unk 31Gly 31conflict
Unk 32Ser 32conflict
Unk 33Gly 33conflict
Unk 34Tyr 34conflict
Unk 35Gln 35conflict
Unk 36Gln 36conflict
Unk 37Leu 37conflict
Unk 38Arg 38conflict
Unk 39Arg 39conflict
Unk 40Met 40conflict
Unk 41Gly 41conflict
Unk 42Met 42conflict
Unk 43Pro 43conflict
Unk 44Met 44conflict
Unk 45Gln 45conflict
Unk 46Val 46conflict
Unk 47Gly 47conflict
Unk 48Met 48conflict
Unk 49Gly 49conflict
Unk 50Trp 50conflict
Unk 51Arg 51conflict
Unk 52Lys 52conflict
Unk 53Val 53conflict
Unk 54Asp 54conflict
Unk 55Ser 55conflict
Unk 56Phe 56conflict
DE: 1 - 747 (UniProt: Q386Q7)
PDBExternal DatabaseDetails
Unk 378Lys 378conflict
Unk 384Thr 384conflict
DF: 1 - 666 (UniProt: C9ZXX4)
PDBExternal DatabaseDetails
Thr 18Ala 18conflict
Asn 372Asp 372conflict
Asn 406Ser 406conflict
Unk 636Gly 636conflict
Lys 638Arg 638conflict
DH: 1 - 581 (UniProt: A0A3L6LGC8)
PDBExternal DatabaseDetails
Gln 75Lys 75conflict
DK: 1 - 324 (UniProt: A0A3L6L3U6)
PDBExternal DatabaseDetails
Asp 97Ser 97conflict
DR: 1 - 270 (UniProt: C9ZPP1)
PDBExternal DatabaseDetails
Pro 128Ser 128conflict
DV: 1 - 183 (UniProt: Q57UZ6)
PDBExternal DatabaseDetails
Ala 163Thr 163conflict
DY: 1 - 163 (UniProt: Q57YD4)
PDBExternal DatabaseDetails
His 34Asp 34conflict
F3: 1 - 966 (UniProt: Q38E61)
PDBExternal DatabaseDetails
Thr 44Ala 44conflict
Val 190Ile 190conflict
Ala 303Ser 303conflict
Asp 418Asn 418conflict
F6: 1 - 675 (UniProt: Q38FQ8)
PDBExternal DatabaseDetails
Arg 285His 285conflict
Ile 291Thr 291conflict
Ala 602Val 602conflict
Cys 676-expression tag
F7: 1 - 679 (UniProt: Q57UW6)
PDBExternal DatabaseDetails
Ile 36Thr 36conflict
Glu 470Lys 470conflict
Val 474Ala 474conflict
F9: 1 - 608 (UniProt: C9ZSL5)
PDBExternal DatabaseDetails
-Glu 381deletion
FM, FN: 1 - 370 (UniProt: C9ZJW2)
PDBExternal DatabaseDetails
His 326Arg 326conflict
Unk 330Gly 330conflict
Ff: 1 - 848 (UniProt: D0A9A9)
PDBExternal DatabaseDetails
Ala 109Val 109conflict
Unk 127Tyr 127conflict
Gln 138Arg 138conflict
Fg: 1 - 550 (UniProt: C9ZYZ4)
PDBExternal DatabaseDetails
Ile 159Val 159conflict
Ile 271Val 271conflict
Met 363Arg 363conflict
Unk 399Glu 399conflict
Asp 436Glu 436conflict
IB: 1 - 803 (UniProt: D0A0V4)
PDBExternal DatabaseDetails
Lys 98Glu 98conflict
Ile 206Met 206conflict
His 572Arg 572conflict
Pro 798Ala 798conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains84
Total formula weight3537657.3
Non-Polymers*Number of molecules14
Total formula weight2660.0
All*Total formula weight3540317.3
*Water molecules are not included.

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PDB entries from 2024-07-24

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