7PS6
Crystal structure of the receptor binding domain of SARS-CoV-2 beta variant spike glycoprotein in complex with Beta-44 and Beta-54 Fabs
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | H | Beta-54 Fab heavy chain | polymer | 231 | 24547.5 | 1 | Homo sapiens (Human) | ||
2 | L | Beta-54 Fab light chain | polymer | 214 | 23264.9 | 1 | Homo sapiens (Human) | ||
3 | E | Spike protein S1 | polymer | 210 | 23646.6 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 | |
4 | C | Beta-44 Fab heavy chain | polymer | 224 | 23907.8 | 1 | Homo sapiens (Human) | ||
5 | D | Beta-44 Fab light chain | polymer | 218 | 22938.3 | 1 | Homo sapiens (Human) | ||
6 | A | alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 367.3 | 1 | In PDB GlyTouCan (G86851RC) | |||
7 | H | 2-(2-METHOXYETHOXY)ETHANOL | non-polymer | 120.1 | 1 | Chemie (PG0) | |||
8 | E, D | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
9 | C | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 2 | Chemie (PEG) | |||
10 | C | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
11 | water | water | 18.0 | 53 | Chemie (HOH) |
Sequence modifications
E: 333 - 526 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Met 319 | - | initiating methionine |
Gly 320 | - | expression tag |
Cys 321 | - | expression tag |
Val 322 | - | expression tag |
Ala 323 | - | expression tag |
Glu 324 | - | expression tag |
Thr 325 | - | expression tag |
Gly 326 | - | expression tag |
His 327 | - | expression tag |
His 328 | - | expression tag |
His 329 | - | expression tag |
His 330 | - | expression tag |
His 331 | - | expression tag |
His 332 | - | expression tag |
Asn 417 | Lys 417 | variant |
Lys 484 | Glu 484 | variant |
Tyr 501 | Asn 501 | variant |
Lys 527 | - | expression tag |
Lys 528 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 5 |
Total formula weight | 118305.0 | |
Branched | Number of molecules | 1 |
Total formula weight | 367.3 | |
Non-Polymers* | Number of molecules | 6 |
Total formula weight | 552.0 | |
All* | Total formula weight | 119224.4 |