7PNX
Assembly intermediate of human mitochondrial ribosome small subunit without mS37 in complex with RBFA and METTL15 conformation a
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 12S mitochondrial rRNA | polymer | 955 | 306547.5 | 1 | Homo sapiens (Human) | ||
| 2 | B (B) | 28S ribosomal protein S2, mitochondrial | polymer | 296 | 33298.2 | 1 | UniProt (Q9Y399) Pfam (PF00318) | Homo sapiens (Human) | S2mt,Mitochondrial small ribosomal subunit protein uS2m |
| 3 | C (C) | 28S ribosomal protein S24, mitochondrial | polymer | 167 | 19046.2 | 1 | UniProt (Q96EL2) Pfam (PF14955) | Homo sapiens (Human) | S24mt,Mitochondrial small ribosomal subunit protein uS3m,bMRP-47,bMRP47 |
| 4 | D (D) | 28S ribosomal protein S5, mitochondrial | polymer | 430 | 48094.6 | 1 | UniProt (P82675) Pfam (PF21251) Pfam (PF00333) Pfam (PF03719) | Homo sapiens (Human) | S5mt,Mitochondrial small ribosomal subunit protein uS5m |
| 5 | E (E) | 28S ribosomal protein S6, mitochondrial | polymer | 125 | 14250.6 | 1 | UniProt (P82932) Pfam (PF01250) | Homo sapiens (Human) | S6mt,Mitochondrial small ribosomal subunit protein bS6m |
| 6 | F (F) | 28S ribosomal protein S7, mitochondrial | polymer | 242 | 28186.2 | 1 | UniProt (Q9Y2R9) Pfam (PF00177) | Homo sapiens (Human) | S7mt,Mitochondrial small ribosomal subunit protein uS7m,bMRP-27a,bMRP27a |
| 7 | G (G) | 28S ribosomal protein S9, mitochondrial | polymer | 396 | 45909.9 | 1 | UniProt (P82933) Pfam (PF00380) | Homo sapiens (Human) | S9mt,Mitochondrial small ribosomal subunit protein uS9m |
| 8 | H (H) | 28S ribosomal protein S10, mitochondrial | polymer | 201 | 23033.5 | 1 | UniProt (P82664) Pfam (PF00338) | Homo sapiens (Human) | S10mt,Mitochondrial small ribosomal subunit protein uS10m |
| 9 | I (I) | 28S ribosomal protein S11, mitochondrial | polymer | 194 | 20663.8 | 1 | UniProt (P82912) Pfam (PF00411) | Homo sapiens (Human) | MRP-S11,S11mt,Cervical cancer proto-oncogene 2 protein,HCC-2,Mitochondrial small ribosomal subunit protein uS11m |
| 10 | J (J) | 28S ribosomal protein S12, mitochondrial | polymer | 138 | 15200.9 | 1 | UniProt (O15235) Pfam (PF00164) | Homo sapiens (Human) | S12mt,MT-RPS12,Mitochondrial small ribosomal subunit protein uS12m |
| 11 | K (K) | 28S ribosomal protein S14, mitochondrial | polymer | 128 | 15168.8 | 1 | UniProt (O60783) Pfam (PF00253) | Homo sapiens (Human) | S14mt,Mitochondrial small ribosomal subunit protein uS14m |
| 12 | L (L) | 28S ribosomal protein S15, mitochondrial | polymer | 257 | 29903.3 | 1 | UniProt (P82914) Pfam (PF00312) | Homo sapiens (Human) | S15mt,Mitochondrial small ribosomal subunit protein uS15m |
| 13 | M (M) | 28S ribosomal protein S16, mitochondrial | polymer | 137 | 15371.9 | 1 | UniProt (Q9Y3D3) Pfam (PF00886) | Homo sapiens (Human) | S16mt,Mitochondrial small ribosomal subunit protein bS16m |
| 14 | N (N) | 28S ribosomal protein S17, mitochondrial | polymer | 130 | 14526.1 | 1 | UniProt (Q9Y2R5) Pfam (PF00366) | Homo sapiens (Human) | S17mt,Mitochondrial small ribosomal subunit protein uS17m |
| 15 | O (O) | 28S ribosomal protein S18b, mitochondrial | polymer | 258 | 29440.6 | 1 | UniProt (Q9Y676) Pfam (PF01084) | Homo sapiens (Human) | S18mt-b,28S ribosomal protein S18-2,mitochondrial,MRP-S18-2,Mitochondrial small ribosomal subunit protein bS18b,Mitochondrial small ribosomal subunit protein mS40 |
| 16 | P (P) | 28S ribosomal protein S18c, mitochondrial | polymer | 142 | 15876.8 | 1 | UniProt (Q9Y3D5) Pfam (PF01084) | Homo sapiens (Human) | S18mt-c,28S ribosomal protein S18-1,mitochondrial,MRP-S18-1,Mitochondrial small ribosomal subunit protein bS18c,Mitochondrial small ribosomal subunit protein bS18m |
| 17 | Q (Q) | 28S ribosomal protein S21, mitochondrial | polymer | 86 | 10675.5 | 1 | UniProt (P82921) Pfam (PF01165) | Homo sapiens (Human) | S21mt,Mitochondrial small ribosomal subunit protein bS21m |
| 18 | R (R) | 28S ribosomal protein S22, mitochondrial | polymer | 360 | 41337.3 | 1 | UniProt (P82650) Pfam (PF10245) | Homo sapiens (Human) | S22mt,Mitochondrial small ribosomal subunit protein mS22 |
| 19 | S (S) | 28S ribosomal protein S23, mitochondrial | polymer | 190 | 21805.7 | 1 | UniProt (Q9Y3D9) Pfam (PF10484) | Homo sapiens (Human) | S23mt,Mitochondrial small ribosomal subunit protein mS23 |
| 20 | T (T) | 28S ribosomal protein S25, mitochondrial | polymer | 173 | 20146.4 | 1 | UniProt (P82663) Pfam (PF05047) | Homo sapiens (Human) | S25mt,Mitochondrial small ribosomal subunit protein mS25 |
| 21 | U (U) | 28S ribosomal protein S26, mitochondrial | polymer | 205 | 24259.8 | 1 | UniProt (Q9BYN8) Pfam (PF14943) | Homo sapiens (Human) | S26mt,28S ribosomal protein S13,mitochondrial,S13mt,Mitochondrial small ribosomal subunit protein mS26 |
| 22 | V (V) | 28S ribosomal protein S27, mitochondrial | polymer | 414 | 47669.3 | 1 | UniProt (Q92552) Pfam (PF10037) | Homo sapiens (Human) | S27mt,Mitochondrial ribosomal protein S27,Mitochondrial small ribosomal subunit protein mS27 |
| 23 | W (W) | 28S ribosomal protein S28, mitochondrial | polymer | 187 | 20878.8 | 1 | UniProt (Q9Y2Q9) Pfam (PF10246) | Homo sapiens (Human) | S28mt,28S ribosomal protein S35,mitochondrial,S35mt,Mitochondrial small ribosomal subunit protein bS1m |
| 24 | X (X) | 28S ribosomal protein S29, mitochondrial | polymer | 398 | 45634.4 | 1 | UniProt (P51398) Pfam (PF10236) | Homo sapiens (Human) | S29mt,Death-associated protein 3,DAP-3,Ionizing radiation resistance conferring protein,Mitochondrial small ribosomal subunit protein mS29 |
| 25 | Y (Y) | 28S ribosomal protein S31, mitochondrial | polymer | 395 | 45391.5 | 1 | UniProt (Q92665) Pfam (PF15433) | Homo sapiens (Human) | S31mt,Imogen 38,Mitochondrial small ribosomal subunit protein mS31 |
| 26 | Z (Z) | 28S ribosomal protein S33, mitochondrial | polymer | 106 | 12657.8 | 1 | UniProt (Q9Y291) Pfam (PF08293) | Homo sapiens (Human) | S33mt,Mitochondrial small ribosomal subunit protein mS33 |
| 27 | AA (0) | 28S ribosomal protein S34, mitochondrial | polymer | 218 | 25695.5 | 1 | UniProt (P82930) Pfam (PF16053) | Homo sapiens (Human) | S34mt,Mitochondrial small ribosomal subunit protein mS34 |
| 28 | BA (1) | 28S ribosomal protein S35, mitochondrial | polymer | 323 | 36898.3 | 1 | UniProt (P82673) Pfam (PF10213) | Homo sapiens (Human) | S35mt,28S ribosomal protein S28,mitochondrial,S28mt,Mitochondrial small ribosomal subunit protein mS35 |
| 29 | CA (3) | Aurora kinase A-interacting protein | polymer | 199 | 22395.3 | 1 | UniProt (Q9NWT8) Pfam (PF08213) | Homo sapiens (Human) | AURKA-interacting protein,28S ribosomal protein S38,mitochondrial,MRP-S38,Mitochondrial small ribosomal subunit protein mS38 |
| 30 | DA (4) | Pentatricopeptide repeat domain-containing protein 3, mitochondrial | polymer | 689 | 78648.5 | 1 | UniProt (Q96EY7) Pfam (PF22330) Pfam (PF13812) | Homo sapiens (Human) | 28S ribosomal protein S39,mitochondrial,MRP-S39,Mitochondrial small ribosomal subunit protein mS39,Transformation-related gene 15 protein,TRG-15 |
| 31 | EA (a) | Putative ribosome-binding factor A, mitochondrial | polymer | 343 | 38417.4 | 1 | UniProt (Q8N0V3) Pfam (PF02033) | Homo sapiens (Human) | |
| 32 | FA (b) | 12S rRNA N4-methylcytidine (m4C) methyltransferase | polymer | 407 | 46184.0 | 1 | UniProt (A6NJ78) Pfam (PF01795) | Homo sapiens (Human) | 12S rRNA m4C methyltransferase,Methyltransferase 5 domain-containing protein 1,Methyltransferase-like protein 15 |
| 33 | GA (A) | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | non-polymer | 663.4 | 1 | Chemie (NAD) | |||
| 34 | AB, AC, BB, BC, CB... (A, B, X, 3) | MAGNESIUM ION | non-polymer | 24.3 | 64 | Chemie (MG) PubChem (888) | |||
| 35 | AD, BD, CD, DD, ED... (A) | POTASSIUM ION | non-polymer | 39.1 | 16 | Chemie (K) PubChem (813) | |||
| 36 | HD (O) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 37 | ID, JD (P, T) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 2 | Chemie (FES) | |||
| 38 | KD (X) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
| 39 | LD (X) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 1 | Chemie (GDP) PubChem (136073927) PubChem (135398619) PubChem (135402030) PubChem (135431654) PubChem (135566337) PubChem (135760556) PubChem (136026707) PubChem (136053418) PubChem (136663964) PubChem (136664748) PubChem (136759848) PubChem (136759849) PubChem (136759850) PubChem (136836636) PubChem (136847074) PubChem (172898537) | |||
| 40 | OD (b) | S-ADENOSYL-L-HOMOCYSTEINE | non-polymer | 384.4 | 1 | Chemie (SAH) PubChem (193) PubChem (13792) PubChem (189149) PubChem (439155) PubChem (5284331) PubChem (71170554) PubChem (13231890) PubChem (16760024) PubChem (25210495) PubChem (44361184) PubChem (177678424) PubChem (46936206) PubChem (21125603) PubChem (25203782) PubChem (52224400) PubChem (50989525) PubChem (51380914) PubChem (52224398) PubChem (6419189) PubChem (57544532) PubChem (59046843) PubChem (59170628) PubChem (164157219) PubChem (59576228) PubChem (66805708) PubChem (70689219) PubChem (70702054) PubChem (70832431) PubChem (118374891) PubChem (118560068) PubChem (126969526) PubChem (129105892) PubChem (143518505) PubChem (154578335) PubChem (163054214) PubChem (163335525) | |||
| 41 | AE, BE, CE, DE, EE... (L, M, N, O, P...) | water | water | 18.0 | 2156 | Chemie (HOH) |
Sequence modifications
I: 1 - 194 (UniProt: P82912)
Q: 2 - 87 (UniProt: P82921)
| PDB | External Database | Details |
|---|---|---|
| 5f0 184 | Asn 184 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 50 | Cys 50 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 32 |
| Total formula weight | 1213214.5 | |
| Non-Polymers* | Number of molecules | 87 |
| Total formula weight | 4596.4 | |
| All* | Total formula weight | 1217810.9 |
