7PNV

Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in complex with RbfA and Mettl15

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A	12S mitochondrial rRNA	polymer	956	306877.5	1		Mus musculus (Mouse)
2	B	28S ribosomal protein S2, mitochondrial	polymer	291	32357.2	1	UniProt (Q924T2) Pfam (PF00318) In PDB	Mus musculus (Mouse)	MRP-S2,S2mt
3	C	28S ribosomal protein S24, mitochondrial	polymer	167	18934.1	1	UniProt (Q9CQV5) Pfam (PF14955) In PDB	Mus musculus (Mouse)	MRP-S24,S24mt
4	D	28S ribosomal protein S5, mitochondrial	polymer	432	48293.6	1	UniProt (Q99N87) Pfam (PF00333) Pfam (PF03719) Pfam (PF21251) In PDB	Mus musculus (Mouse)	MRP-S5,S5mt
5	E	28S ribosomal protein S6, mitochondrial	polymer	125	14333.6	1	UniProt (P58064) Pfam (PF01250) In PDB	Mus musculus (Mouse)	MRP-S6,S6mt
6	F	28S ribosomal protein S7, mitochondrial	polymer	242	28112.9	1	UniProt (Q80X85) Pfam (PF00177) In PDB	Mus musculus (Mouse)	MRP-S7,S7mt
7	G	28S ribosomal protein S9, mitochondrial	polymer	390	44997.4	1	UniProt (Q9D7N3) Pfam (PF00380) In PDB	Mus musculus (Mouse)	MRP-S9,S9mt
8	H	28S ribosomal protein S10, mitochondrial	polymer	160	18729.8	1	UniProt (Q80ZK0) Pfam (PF00338) In PDB	Mus musculus (Mouse)	MRP-S10,S10mt
9	I	28S ribosomal protein S11, mitochondrial	polymer	191	20252.2	1	UniProt (Q9DCA2) Pfam (PF00411) In PDB	Mus musculus (Mouse)	MRP-S11,S11mt
10	J	28S ribosomal protein S12, mitochondrial	polymer	139	15469.3	1	UniProt (O35680) Pfam (PF00164) In PDB	Mus musculus (Mouse)	MRP-S12,S12mt,MT-RPS12
11	K	28S ribosomal protein S14, mitochondrial	polymer	128	14949.6	1	UniProt (Q9CR88) Pfam (PF00253) In PDB	Mus musculus (Mouse)	MRP-S14,S14mt
12	L	28S ribosomal protein S15, mitochondrial	polymer	258	29523.7	1	UniProt (Q9DC71) Pfam (PF00312) In PDB	Mus musculus (Mouse)	MRP-S15,S15mt
13	M	28S ribosomal protein S16, mitochondrial	polymer	135	15218.7	1	UniProt (Q9CPX7) Pfam (PF00886) In PDB	Mus musculus (Mouse)	MRP-S16,S16mt
14	N	28S ribosomal protein S17, mitochondrial	polymer	120	13405.9	1	UniProt (Q9CQE3) Pfam (PF00366) In PDB	Mus musculus (Mouse)	MRP-S17,S17mt
15	O	28S ribosomal protein S18b, mitochondrial	polymer	254	28740.7	1	UniProt (Q99N84) Pfam (PF01084) In PDB	Mus musculus (Mouse)	MRP-S18-b,Mrps18-b,S18mt-b,28S ribosomal protein S18-2,mitochondrial,MRP-S18-2
16	P	28S ribosomal protein S18c, mitochondrial	polymer	143	16300.1	1	UniProt (Q8R2L5) Pfam (PF01084) In PDB	Mus musculus (Mouse)	MRP-S18-c,Mrps18-c,S18mt-c,28S ribosomal protein S18-1,mitochondrial,MRP-S18-1
17	Q	28S ribosomal protein S21, mitochondrial	polymer	86	10493.2	1	UniProt (P58059) Pfam (PF01165) In PDB	Mus musculus (Mouse)	MRP-S21,S21mt
18	R	28S ribosomal protein S22, mitochondrial	polymer	359	41255.1	1	UniProt (Q9CXW2) Pfam (PF10245) In PDB	Mus musculus (Mouse)	MRP-S22,S22mt
19	S	28S ribosomal protein S23, mitochondrial	polymer	177	20378.1	1	UniProt (Q8VE22) Pfam (PF10484) In PDB	Mus musculus (Mouse)	MRP-S23,S23mt
20	T	28S ribosomal protein S25, mitochondrial	polymer	171	19950.4	1	UniProt (Q9D125) Pfam (PF05047) In PDB	Mus musculus (Mouse)	MRP-S25,S25mt
21	U	28S ribosomal protein S26, mitochondrial	polymer	200	23484.8	1	UniProt (Q80ZS3) Pfam (PF14943) In PDB	Mus musculus (Mouse)	MRP-S26,S26mt
22	V	28S ribosomal protein S27, mitochondrial	polymer	415	47836.4	1	UniProt (Q8BK72) Pfam (PF10037) In PDB	Mus musculus (Mouse)	MRP-S27,S27mt,Mitochondrial ribosomal protein S27
23	W	28S ribosomal protein S28, mitochondrial	polymer	186	20555.3	1	UniProt (Q9CY16) Pfam (PF10246) In PDB	Mus musculus (Mouse)	MRP-S28,S28mt
24	X	28S ribosomal protein S29, mitochondrial	polymer	391	44766.3	1	UniProt (Q9ER88) Pfam (PF10236) In PDB	Mus musculus (Mouse)	MRP-S29,S29mt,Death-associated protein 3,DAP-3
25	Y	28S ribosomal protein S31, mitochondrial	polymer	384	43950.8	1	UniProt (Q61733) Pfam (PF15433) In PDB	Mus musculus (Mouse)	MRP-S31,S31mt,Imogen 38
26	Z	28S ribosomal protein S33, mitochondrial	polymer	106	12487.5	1	UniProt (Q9D2R8) Pfam (PF08293) In PDB	Mus musculus (Mouse)	MRP-S33,S33mt,Ganglioside-induced differentiation-associated-protein 3
27	0	28S ribosomal protein S34, mitochondrial	polymer	218	25874.8	1	UniProt (Q9JIK9) Pfam (PF16053) In PDB	Mus musculus (Mouse)	MRP-S34,S34mt,T-complex expressed gene 2 protein
28	1	28S ribosomal protein S35, mitochondrial	polymer	320	36028.3	1	UniProt (Q8BJZ4) Pfam (PF10213) In PDB	Mus musculus (Mouse)	MRP-S35,S35mt
29	3	Aurora kinase A-interacting protein	polymer	200	23345.4	1	UniProt (Q9DCJ7) Pfam (PF08213) In PDB	Mus musculus (Mouse)	AURKA-interacting protein,28S ribosomal protein S38,mitochondrial,MRP-S38
30	4	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	polymer	685	77890.0	1	UniProt (Q14C51) Pfam (PF22330) Pfam (PF13812) In PDB	Mus musculus (Mouse)	28S ribosomal protein S39,mitochondrial,MRP-S39
31	a	Putative ribosome-binding factor A, mitochondrial	polymer	350	39382.3	1	UniProt (Q6P3B9) Pfam (PF02033) In PDB	Mus musculus (Mouse)
32	b	12S rRNA N4-methylcytidine methyltransferase	polymer	406	45343.9	1	UniProt (Q9DCL4) Pfam (PF01795) In PDB	Mus musculus (Mouse)	12S rRNA m4C methyltransferase,Methyltransferase 5 domain-containing protein 1,Methyltransferase-like protein 15
33	A, B, X, 3	MAGNESIUM ION	non-polymer		24.3	49	Chemie (MG)
34	A	POTASSIUM ION	non-polymer		39.1	13	Chemie (K)
35	O	ZINC ION	non-polymer		65.4	1	Chemie (ZN)
36	P, T	FE2/S2 (INORGANIC) CLUSTER	non-polymer		175.8	2	Chemie (FES)
37	X	ADENOSINE-5'-TRIPHOSPHATE	non-polymer		507.2	1	Chemie (ATP)
38	b	S-ADENOSYL-L-HOMOCYSTEINE	non-polymer		384.4	1	Chemie (SAH)
39		water	water		18.0	868	Chemie (HOH)

Sequence modifications

I: 1 - 191 (UniProt: Q9DCA2)

PDB	External Database	Details
5f0 181	Asn 181	conflict

Contents of the asymmetric unit

Polymers	Number of chains	32
	Total formula weight	1199518.9
Non-Polymers*	Number of molecules	67
	Total formula weight	3007.9
All*	Total formula weight	1202526.8

*Water molecules are not included.