7PNV
Assembly intermediate of mouse mitochondrial ribosome small subunit without mS37 in complex with RbfA and Mettl15
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 12S mitochondrial rRNA | polymer | 956 | 306877.5 | 1 | Mus musculus (Mouse) | ||
| 2 | B (B) | 28S ribosomal protein S2, mitochondrial | polymer | 291 | 32357.2 | 1 | UniProt (Q924T2) Pfam (PF00318) | Mus musculus (Mouse) | MRP-S2,S2mt |
| 3 | C (C) | 28S ribosomal protein S24, mitochondrial | polymer | 167 | 18934.1 | 1 | UniProt (Q9CQV5) Pfam (PF14955) | Mus musculus (Mouse) | MRP-S24,S24mt |
| 4 | D (D) | 28S ribosomal protein S5, mitochondrial | polymer | 432 | 48293.6 | 1 | UniProt (Q99N87) Pfam (PF00333) Pfam (PF03719) Pfam (PF21251) | Mus musculus (Mouse) | MRP-S5,S5mt |
| 5 | E (E) | 28S ribosomal protein S6, mitochondrial | polymer | 125 | 14333.6 | 1 | UniProt (P58064) Pfam (PF01250) | Mus musculus (Mouse) | MRP-S6,S6mt |
| 6 | F (F) | 28S ribosomal protein S7, mitochondrial | polymer | 242 | 28112.9 | 1 | UniProt (Q80X85) Pfam (PF00177) | Mus musculus (Mouse) | MRP-S7,S7mt |
| 7 | G (G) | 28S ribosomal protein S9, mitochondrial | polymer | 390 | 44997.4 | 1 | UniProt (Q9D7N3) Pfam (PF00380) | Mus musculus (Mouse) | MRP-S9,S9mt |
| 8 | H (H) | 28S ribosomal protein S10, mitochondrial | polymer | 160 | 18729.8 | 1 | UniProt (Q80ZK0) Pfam (PF00338) | Mus musculus (Mouse) | MRP-S10,S10mt |
| 9 | I (I) | 28S ribosomal protein S11, mitochondrial | polymer | 191 | 20252.2 | 1 | UniProt (Q9DCA2) Pfam (PF00411) | Mus musculus (Mouse) | MRP-S11,S11mt |
| 10 | J (J) | 28S ribosomal protein S12, mitochondrial | polymer | 139 | 15469.3 | 1 | UniProt (O35680) Pfam (PF00164) | Mus musculus (Mouse) | MRP-S12,S12mt,MT-RPS12 |
| 11 | K (K) | 28S ribosomal protein S14, mitochondrial | polymer | 128 | 14949.6 | 1 | UniProt (Q9CR88) Pfam (PF00253) | Mus musculus (Mouse) | MRP-S14,S14mt |
| 12 | L (L) | 28S ribosomal protein S15, mitochondrial | polymer | 258 | 29523.7 | 1 | UniProt (Q9DC71) Pfam (PF00312) | Mus musculus (Mouse) | MRP-S15,S15mt |
| 13 | M (M) | 28S ribosomal protein S16, mitochondrial | polymer | 135 | 15218.7 | 1 | UniProt (Q9CPX7) Pfam (PF00886) | Mus musculus (Mouse) | MRP-S16,S16mt |
| 14 | N (N) | 28S ribosomal protein S17, mitochondrial | polymer | 120 | 13405.9 | 1 | UniProt (Q9CQE3) Pfam (PF00366) | Mus musculus (Mouse) | MRP-S17,S17mt |
| 15 | O (O) | 28S ribosomal protein S18b, mitochondrial | polymer | 254 | 28740.7 | 1 | UniProt (Q99N84) Pfam (PF01084) | Mus musculus (Mouse) | MRP-S18-b,Mrps18-b,S18mt-b,28S ribosomal protein S18-2,mitochondrial,MRP-S18-2 |
| 16 | P (P) | 28S ribosomal protein S18c, mitochondrial | polymer | 143 | 16300.1 | 1 | UniProt (Q8R2L5) Pfam (PF01084) | Mus musculus (Mouse) | MRP-S18-c,Mrps18-c,S18mt-c,28S ribosomal protein S18-1,mitochondrial,MRP-S18-1 |
| 17 | Q (Q) | 28S ribosomal protein S21, mitochondrial | polymer | 86 | 10493.2 | 1 | UniProt (P58059) Pfam (PF01165) | Mus musculus (Mouse) | MRP-S21,S21mt |
| 18 | R (R) | 28S ribosomal protein S22, mitochondrial | polymer | 359 | 41255.1 | 1 | UniProt (Q9CXW2) Pfam (PF10245) | Mus musculus (Mouse) | MRP-S22,S22mt |
| 19 | S (S) | 28S ribosomal protein S23, mitochondrial | polymer | 177 | 20378.1 | 1 | UniProt (Q8VE22) Pfam (PF10484) | Mus musculus (Mouse) | MRP-S23,S23mt |
| 20 | T (T) | 28S ribosomal protein S25, mitochondrial | polymer | 171 | 19950.4 | 1 | UniProt (Q9D125) Pfam (PF05047) | Mus musculus (Mouse) | MRP-S25,S25mt |
| 21 | U (U) | 28S ribosomal protein S26, mitochondrial | polymer | 200 | 23484.8 | 1 | UniProt (Q80ZS3) Pfam (PF14943) | Mus musculus (Mouse) | MRP-S26,S26mt |
| 22 | V (V) | 28S ribosomal protein S27, mitochondrial | polymer | 415 | 47836.4 | 1 | UniProt (Q8BK72) Pfam (PF10037) | Mus musculus (Mouse) | MRP-S27,S27mt,Mitochondrial ribosomal protein S27 |
| 23 | W (W) | 28S ribosomal protein S28, mitochondrial | polymer | 186 | 20555.3 | 1 | UniProt (Q9CY16) Pfam (PF10246) | Mus musculus (Mouse) | MRP-S28,S28mt |
| 24 | X (X) | 28S ribosomal protein S29, mitochondrial | polymer | 391 | 44766.3 | 1 | UniProt (Q9ER88) Pfam (PF10236) | Mus musculus (Mouse) | MRP-S29,S29mt,Death-associated protein 3,DAP-3 |
| 25 | Y (Y) | 28S ribosomal protein S31, mitochondrial | polymer | 384 | 43950.8 | 1 | UniProt (Q61733) Pfam (PF15433) | Mus musculus (Mouse) | MRP-S31,S31mt,Imogen 38 |
| 26 | Z (Z) | 28S ribosomal protein S33, mitochondrial | polymer | 106 | 12487.5 | 1 | UniProt (Q9D2R8) Pfam (PF08293) | Mus musculus (Mouse) | MRP-S33,S33mt,Ganglioside-induced differentiation-associated-protein 3 |
| 27 | AA (0) | 28S ribosomal protein S34, mitochondrial | polymer | 218 | 25874.8 | 1 | UniProt (Q9JIK9) Pfam (PF16053) | Mus musculus (Mouse) | MRP-S34,S34mt,T-complex expressed gene 2 protein |
| 28 | BA (1) | 28S ribosomal protein S35, mitochondrial | polymer | 320 | 36028.3 | 1 | UniProt (Q8BJZ4) Pfam (PF10213) | Mus musculus (Mouse) | MRP-S35,S35mt |
| 29 | CA (3) | Aurora kinase A-interacting protein | polymer | 200 | 23345.4 | 1 | UniProt (Q9DCJ7) Pfam (PF08213) | Mus musculus (Mouse) | AURKA-interacting protein,28S ribosomal protein S38,mitochondrial,MRP-S38 |
| 30 | DA (4) | Pentatricopeptide repeat domain-containing protein 3, mitochondrial | polymer | 685 | 77890.0 | 1 | UniProt (Q14C51) Pfam (PF22330) Pfam (PF13812) | Mus musculus (Mouse) | 28S ribosomal protein S39,mitochondrial,MRP-S39 |
| 31 | EA (a) | Putative ribosome-binding factor A, mitochondrial | polymer | 350 | 39382.3 | 1 | UniProt (Q6P3B9) Pfam (PF02033) | Mus musculus (Mouse) | |
| 32 | FA (b) | 12S rRNA N4-methylcytidine methyltransferase | polymer | 406 | 45343.9 | 1 | UniProt (Q9DCL4) Pfam (PF01795) | Mus musculus (Mouse) | 12S rRNA m4C methyltransferase,Methyltransferase 5 domain-containing protein 1,Methyltransferase-like protein 15 |
| 33 | AB, BB, CB, DB, EB... (A, B, X, 3) | MAGNESIUM ION | non-polymer | 24.3 | 49 | Chemie (MG) | |||
| 34 | AC, BC, CC, DC, EC... (A) | POTASSIUM ION | non-polymer | 39.1 | 13 | Chemie (K) | |||
| 35 | OC (O) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 36 | PC, QC (P, T) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 2 | Chemie (FES) | |||
| 37 | RC (X) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
| 38 | UC (b) | S-ADENOSYL-L-HOMOCYSTEINE | non-polymer | 384.4 | 1 | Chemie (SAH) | |||
| 39 | AD, BD, CD, DD, ED... (F, G, H, I, J...) | water | water | 18.0 | 868 | Chemie (HOH) |
Sequence modifications
I: 1 - 191 (UniProt: Q9DCA2)
| PDB | External Database | Details |
|---|---|---|
| 5f0 181 | Asn 181 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 32 |
| Total formula weight | 1199518.9 | |
| Non-Polymers* | Number of molecules | 67 |
| Total formula weight | 3007.9 | |
| All* | Total formula weight | 1202526.8 |
