7PNK

Unstacked compact Dunaliella PSII

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, Y (A, a)	Photosystem II protein D1	polymer	336	37291.5	2	UniProt (D0FY08)	Dunaliella salina	PSII D1 protein,Photosystem II Q(B) protein
2	B, Z (B, b)	Photosystem II CP47 reaction center protein	polymer	484	53321.5	2	UniProt (A0A1C8XRM6)	Dunaliella salina	PSII 47 kDa protein,Protein CP-47
3	AA, C (V, v)	Photosystem II reaction center protein Ycf12	polymer	32	3217.9	2	UniProt (D0FY13)	Dunaliella salina
4	BA, D (C, c)	Photosystem II CP43 reaction center protein	polymer	449	49129.0	2	UniProt (D0FXY3)	Dunaliella salina	PSII 43 kDa protein,Protein CP-43
5	CA, E (D, d)	Photosystem II D2 protein	polymer	348	38965.4	2	UniProt (A0A1C8XRK9)	Dunaliella salina	PSII D2 protein,Photosystem Q(A) protein
6	DA, F (E, e)	Cytochrome b559 subunit alpha	polymer	76	8743.8	2	UniProt (D0FY01)	Dunaliella salina	PSII reaction center subunit V
7	EA, G (F, f)	Cytochrome b559 subunit beta	polymer	31	3549.3	2	UniProt (A0A1C8XRP4)	Dunaliella salina	PSII reaction center subunit VI
8	FA, H (H, h)	Photosystem II reaction center protein H	polymer	67	7124.4	2	UniProt (A0A1C8XRP3)	Dunaliella salina	PSII-H
9	GA, I (I, i)	Photosystem II reaction center protein I	polymer	35	3929.6	2	UniProt (D0FXX5)	Dunaliella salina	PSII-I,PSII 4.8 kDa protein
10	HA, J (J, j)	Photosystem II reaction center protein J	polymer	36	3737.5	2	UniProt (A0A1C8XRM8)	Dunaliella salina	PSII-J
11	IA, K (K, k)	Photosystem II reaction center protein K	polymer	37	4160.0	2	UniProt (D0FXX2)	Dunaliella salina	PSII-K
12	JA, L (L, l)	Photosystem II reaction center protein L	polymer	38	4417.2	2	UniProt (D0FY19)	Dunaliella salina	PSII-L
13	KA, M (M, m)	Photosystem II reaction center protein M	polymer	31	3308.0	2	UniProt (D0FXZ3)	Dunaliella salina	PSII-M
14	LA, N (O, o)	PsbO	polymer	238	25900.0	2		Dunaliella salina (Green alga Protococcus salinus)
15	MA, O (P, p)	PsbP	polymer	187	20425.7	2		Dunaliella salina (Green alga Protococcus salinus)
16	NA, P (T, t)	Photosystem II reaction center protein T	polymer	30	3478.2	2	UniProt (D0FY04)	Dunaliella salina	PSII-T
17	OA, Q (W, w)	PsbW	polymer	44	4698.3	2		Dunaliella salina (Green alga Protococcus salinus)
18	PA, R (X, x)	PsbX	polymer	30	2854.4	2		Dunaliella salina (Green alga Protococcus salinus)
19	QA, S (Z, z)	Photosystem II reaction center protein Z	polymer	61	6430.6	2	UniProt (D0FXZ2)	Dunaliella salina	PSII-Z
20	T (N)	Chlorophyll a-b binding protein of LHCII type I, chloroplastic	polymer	222	24075.1	1		Dunaliella salina (Green alga Protococcus salinus)
21	U (G)	Chlorophyll a-b binding protein, chloroplastic	polymer	221	23719.5	1	UniProt (A1XKU7)	Dunaliella salina
22	V (S)	CP26	polymer	243	26233.6	1		Dunaliella salina (Green alga Protococcus salinus)
23	W (Y)	LHCII M1	polymer	222	23571.6	1		Dunaliella salina (Green alga Protococcus salinus)
24	RA, X (U, u)	PsbU	polymer	27	3219.6	2		Dunaliella salina (Green alga Protococcus salinus)
25	CH, SA (a, A)	CA-MN4-O5 CLUSTER	non-polymer		339.8	2	Chemie (OEX)
26	DH, TA (a, A)	FE (II) ION	non-polymer		55.8	2	Chemie (FE2) PubChem (27284)
27	EH, FH, UA, VA (a, A)	CHLORIDE ION	non-polymer		35.5	4	Chemie (CL) PubChem (312)
28	AE, AI, AJ, BB, BE... (N, b, c, A, G...)	CHLOROPHYLL A	non-polymer		893.5	106	Chemie (CLA)
29	AB, JH, KH, ZA (A, a)	PHEOPHYTIN A	non-polymer		871.2	4	Chemie (PHO)
30	CB, CJ, DJ, EJ, FJ... (A, c, b, D, a...)	BETA-CAROTENE	non-polymer		536.9	16	Chemie (BCR) PubChem (21672398) PubChem (176490061) PubChem (177696266) PubChem (46783370) PubChem (46846294) PubChem (5280489) PubChem (92863345) PubChem (124919640) PubChem (54603957) PubChem (54612003) PubChem (146673260) PubChem (152743364) PubChem (160505766) PubChem (86765360) PubChem (91827292) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (573) PubChem (5315709) PubChem (5353436) PubChem (5356616) PubChem (124919639) PubChem (5927371) PubChem (6477957) PubChem (9828626) PubChem (10256668) PubChem (129651951) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (132274419) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668)
31	DB, DD, EC, FK, JI... (A, C, B, m, b...)	1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL	non-polymer		795.1	10	Chemie (SQD) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (159321) PubChem (481096) PubChem (134765349) PubChem (102201395) PubChem (5459390) PubChem (9810997) PubChem (9918745) PubChem (10219110) PubChem (10373133) PubChem (14463145)
32	AC, AD, AK, EB, HK... (B, C, h, A, w...)	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE	non-polymer		787.2	14	Chemie (LMG)
33	FB, PH, ZG (A, a, Y)	SPHINGOSINE	non-polymer		299.5	3	Chemie (SPH)
34	II, YB (b, B)	(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol	non-polymer		568.9	2	Chemie (C7Z)
35	BC, GJ, HJ, IJ, LI... (B, c, b, C)	DIGALACTOSYL DIACYL GLYCEROL (DGDG)	non-polymer		949.3	8	Chemie (DGD) PubChem (24865462) PubChem (24865463) PubChem (46936671) PubChem (447899) PubChem (4629344) PubChem (50904896) PubChem (53480668) PubChem (15991538) PubChem (154573294) PubChem (171123158) PubChem (448441) PubChem (134746152) PubChem (140529801)
36	CC, FG, GK, MI, XD (B, S, t, b, T)	1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE	non-polymer		705.0	5	Chemie (3PH) PubChem (86641) PubChem (447938) PubChem (16211043)
37	BD, CK, DC, LJ, NI... (C, j, B, c, b...)	DIACYL GLYCEROL	non-polymer		625.0	6	Chemie (DGA) PubChem (102615) PubChem (9543705) PubChem (11285052)
38	CD, DG, EK, KD, KF... (C, S, l, D, G...)	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE	non-polymer		723.0	14	Chemie (LHG) PubChem (65144) PubChem (46936292) PubChem (13305396) PubChem (73416066) PubChem (446440) PubChem (9547104) PubChem (11846227) PubChem (138986743)
39	ED, OJ (C, c)	trimethyl-[(2~{R})-1-oxidanyl-1-oxidanylidene-4-[(2~{S})-2-[(1~{S})-1-oxidanyloctadecoxy]-3-[(1~{R})-1-oxidanyloctadecoxy]propoxy]butan-2-yl]azanium	non-polymer		773.2	2	Chemie (LMK) PubChem (146672934)
40	FD, PJ (D, d)	BICARBONATE ION	non-polymer		61.0	2	Chemie (BCT) PubChem (769)
41	JD, TJ (D, d)	2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE	non-polymer		749.2	2	Chemie (PL9) PubChem (23304240) PubChem (21881166) PubChem (20286) PubChem (5375177) PubChem (6323474) PubChem (6325820) PubChem (6433402)
42	OD, YJ (F, f)	PROTOPORPHYRIN IX CONTAINING FE	non-polymer		616.5	2	Chemie (HEM)
43	PD, ZJ (H, h)	(3R)-beta,beta-caroten-3-ol	non-polymer		552.9	2	Chemie (RRX) PubChem (20056910) PubChem (177443103) PubChem (44554791) PubChem (91496173) PubChem (5281235) PubChem (124934401) PubChem (101088204) PubChem (102330248) PubChem (102330249) PubChem (102330250) PubChem (92111) PubChem (182237) PubChem (5316150) PubChem (124934402) PubChem (124934403) PubChem (124934404) PubChem (6384256) PubChem (152743353) PubChem (163007083) PubChem (163007084) PubChem (168433814) PubChem (169423484)
44	RD (I)	GLYCEROL	non-polymer		92.1	1	Chemie (GOL) PubChem (753)
45	BK, DK, SD, UD (i, k, I, K)	Tripalmitoylglycerol	non-polymer		807.3	4	Chemie (4RF) PubChem (11147)
46	AF, DE, EE, FE, GE... (G, N, Y, S)	CHLOROPHYLL B	non-polymer		907.5	21	Chemie (CHL)
47	AG, BG, GF, HF, NE... (S, G, N, Y)	(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL	non-polymer		568.9	8	Chemie (LUT) PubChem (24728610) PubChem (25202165) PubChem (177565809) PubChem (177696530) PubChem (25245095) PubChem (53477760) PubChem (57922343) PubChem (44481270) PubChem (46835684) PubChem (31380) PubChem (448437) PubChem (89305995) PubChem (91007743) PubChem (91330154) PubChem (91467158) PubChem (5281243) PubChem (93535598) PubChem (94424894) PubChem (100935514) PubChem (101351907) PubChem (101351906) PubChem (5368396) PubChem (53477744) PubChem (53477774) PubChem (131801656) PubChem (12085680) PubChem (139335388) PubChem (162679657) PubChem (162945700) PubChem (162945708) PubChem (175679236) PubChem (175679086) PubChem (90820720) PubChem (91240120) PubChem (91519940) PubChem (93971688) PubChem (93971689) PubChem (93971690) PubChem (93971691) PubChem (94424892) PubChem (94424893) PubChem (101351905) PubChem (101351908) PubChem (101351909) PubChem (101351910) PubChem (101727094) PubChem (102093134) PubChem (102514741) PubChem (181579) PubChem (441664) PubChem (6325550) PubChem (6433159) PubChem (125183271) PubChem (125183272) PubChem (125183273) PubChem (125183613) PubChem (125183614) PubChem (126970006) PubChem (10210008) PubChem (10257404) PubChem (12359017) PubChem (131801655) PubChem (16061195) PubChem (16061196) PubChem (16061204) PubChem (139595700) PubChem (152743345) PubChem (156583347) PubChem (159139983) PubChem (162945701) PubChem (162945702) PubChem (162945703) PubChem (162945704) PubChem (162945705) PubChem (162945706) PubChem (162945707) PubChem (162945709) PubChem (169423521) PubChem (169954357) PubChem (172748694)
48	IF, PE, WG (G, N, Y)	(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL	non-polymer		600.9	3	Chemie (XAT) PubChem (24970201) PubChem (51346155) PubChem (92096) PubChem (46936684) PubChem (98049827) PubChem (101341889) PubChem (101341891) PubChem (6852159) PubChem (53477762) PubChem (126456015) PubChem (12358664) PubChem (155293357) PubChem (162964874) PubChem (163187351) PubChem (177696491) PubChem (98049828) PubChem (101341888) PubChem (101341890) PubChem (101341892) PubChem (101341893) PubChem (101341894) PubChem (101341895) PubChem (179930) PubChem (448438) PubChem (5282218) PubChem (5315242) PubChem (6384269) PubChem (6442428) PubChem (125183415) PubChem (125183416) PubChem (125183417) PubChem (9851662) PubChem (129888894) PubChem (12358665) PubChem (12358669) PubChem (137331554) PubChem (152743429) PubChem (162964869) PubChem (162964870) PubChem (162964871) PubChem (162964872) PubChem (162964873) PubChem (162964875) PubChem (162964876) PubChem (163186889) PubChem (169544055) PubChem (171036315) PubChem (172817291)
49	CG, JF, QE, XG (S, G, N, Y)	(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL	non-polymer		600.9	4	Chemie (NEX) PubChem (177697037) PubChem (21158515) PubChem (159749) PubChem (5281247) PubChem (101866355) PubChem (6384259) PubChem (52948899) PubChem (162910894) PubChem (162910891) PubChem (162910895) PubChem (101052392) PubChem (101866356) PubChem (101866357) PubChem (102060371) PubChem (4481261) PubChem (5282217) PubChem (5320120) PubChem (10908146) PubChem (12358959) PubChem (139033583) PubChem (162910892) PubChem (162910893) PubChem (162910896) PubChem (169502056) PubChem (172012198)
50	EG (S)	(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate	non-polymer		453.6	1	Chemie (LPX) PubChem (25229539) PubChem (89229) PubChem (9547069)
51	AH, BH (Y)	PHOSPHATIDYLETHANOLAMINE	non-polymer		734.0	2	Chemie (PTY) PubChem (446872) PubChem (3330137)

Sequence modifications

J, j: 7 - 42 (UniProt: A0A1C8XRM8)

PDB	External Database	Details
Ile 7	Thr 7	conflict
Leu 42	Gln 42	conflict

M, m: 3 - 33 (UniProt: D0FXZ3)

PDB	External Database	Details
Thr 9	Ile 9	conflict

G: 31 - 251 (UniProt: A1XKU7)

PDB	External Database	Details
Ala 180	Pro 181	conflict

Contents of the asymmetric unit

Polymers	Number of chains	44
	Total formula weight	673404.0
Non-Polymers*	Number of molecules	250
	Total formula weight	192279.0
All*	Total formula weight	865683.0

*Water molecules are not included.