7PJS
Structure of the 70S ribosome with tRNAs in the classical pre-translocation state and apramycin (C)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 50S ribosomal protein L32 | polymer | 57 | 6463.4 | 1 | UniProt (P0A7N4) Pfam (PF01783) | Escherichia coli | ribosomal protein bL32 |
| 2 | B (1) | 50S ribosomal protein L33 | polymer | 55 | 6388.6 | 1 | UniProt (P0A7N9) Pfam (PF00471) | Escherichia coli | ribosomal protein bL33 |
| 3 | C (2) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) | Escherichia coli | ribosomal protein bL34 |
| 4 | D (3) | 50S ribosomal protein L35 | polymer | 65 | 7313.0 | 1 | UniProt (P0A7Q1) Pfam (PF01632) | Escherichia coli | Ribosomal protein A, ribosomal protein bL35 |
| 5 | E (4) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) Pfam (PF00444) | Escherichia coli | Ribosomal protein B, ribosomal protein bL36 |
| 6 | F (5) | 50S ribosomal protein L10 | polymer | 165 | 17736.6 | 1 | UniProt (A0A073UC57) | Escherichia coli | |
| 7 | G (6) | 50S ribosomal protein L31 | polymer | 70 | 7887.1 | 1 | UniProt (U9XX47) | Escherichia coli | |
| 8 | H (A) | 23S ribosomal RNA | polymer | 2903 | 941541.4 | 1 | Escherichia coli | ||
| 9 | I (B) | 5S ribosomal RNA | polymer | 120 | 38790.1 | 1 | GenBank (CP035706.1) | Escherichia coli | |
| 10 | J (C) | 50S ribosomal protein L2 | polymer | 273 | 29923.6 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli | ribosomal protein uL2 |
| 11 | K (D) | 50S ribosomal protein L3 | polymer | 209 | 22277.5 | 1 | UniProt (P60438) Pfam (PF00297) | Escherichia coli | ribosomal protein uL3 |
| 12 | L (E) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) | Escherichia coli | ribosomal protein uL4 |
| 13 | M (F) | 50S ribosomal protein L5 | polymer | 179 | 20333.6 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) | Escherichia coli | ribosomal protein uL5 |
| 14 | N (G) | 50S ribosomal protein L6 | polymer | 177 | 18932.8 | 1 | UniProt (P0AG55) Pfam (PF00347) | Escherichia coli | ribosomal protein uL6 |
| 15 | O (H) | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) | Escherichia coli | ribosomal protein bL9 |
| 16 | P (I) | 50S ribosomal protein L11 | polymer | 142 | 14894.4 | 1 | UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) | Escherichia coli | ribosomal protein uL11 |
| 17 | Q (J) | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) Pfam (PF00572) | Escherichia coli | ribosomal protein uL13 |
| 18 | R (K) | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) Pfam (PF00238) | Escherichia coli | ribosomal protein uL14 |
| 19 | S (L) | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) | Escherichia coli | ribosomal protein uL15 |
| 20 | T (M) | 50S ribosomal protein L16 | polymer | 136 | 15312.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) | Escherichia coli | ribosomal protein uL16 |
| 21 | U (N) | 50S ribosomal protein L17 | polymer | 127 | 14393.7 | 1 | UniProt (P0AG44) Pfam (PF01196) | Escherichia coli | ribosomal protein bL17 |
| 22 | V (O) | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) | Escherichia coli | ribosomal protein uL18 |
| 23 | W (P) | 50S ribosomal protein L19 | polymer | 115 | 13159.3 | 1 | UniProt (P0A7K6) Pfam (PF01245) | Escherichia coli | ribosomal protein bL19 |
| 24 | X (Q) | 50S ribosomal protein L20 | polymer | 118 | 13528.0 | 1 | UniProt (P0A7L3) Pfam (PF00453) | Escherichia coli | ribosomal protein bL20 |
| 25 | Y (R) | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) | Escherichia coli | ribosomal protein bL21 |
| 26 | Z (S) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) | Escherichia coli | ribosomal protein uL22 |
| 27 | AA (T) | 50S ribosomal protein L23 | polymer | 100 | 11222.2 | 1 | UniProt (P0ADZ0) Pfam (PF00276) | Escherichia coli | ribosomal protein uL23 |
| 28 | BA (U) | 50S ribosomal protein L24 | polymer | 104 | 11339.3 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) | Escherichia coli | ribosomal protein uL24 |
| 29 | CA (V) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) | Escherichia coli | ribosomal protein bL25 |
| 30 | DA (W) | 50S ribosomal protein L27 | polymer | 85 | 9146.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) | Escherichia coli | ribosomal protein bL27 |
| 31 | EA (X) | 50S ribosomal protein L28 | polymer | 78 | 9027.6 | 1 | UniProt (P0A7M2) Pfam (PF00830) | Escherichia coli | ribosomal protein bL28 |
| 32 | FA (Y) | 50S ribosomal protein L29 | polymer | 63 | 7286.5 | 1 | UniProt (P0A7M6) Pfam (PF00831) | Escherichia coli | ribosomal protein uL29 |
| 33 | GA (Z) | 50S ribosomal protein L30 | polymer | 59 | 6554.8 | 1 | UniProt (P0AG51) Pfam (PF00327) | Escherichia coli | ribosomal protein uL30 |
| 34 | HA (a) | 16S ribosomal RNA | polymer | 1542 | 499873.4 | 1 | Escherichia coli | ||
| 35 | IA (b) | 30S ribosomal protein S2 | polymer | 240 | 26652.6 | 1 | UniProt (C3TPN2) | Escherichia coli | |
| 36 | JA (c) | 30S ribosomal protein S3 | polymer | 233 | 26031.3 | 1 | UniProt (C3SQX2) | Escherichia coli | |
| 37 | KA (d) | 30S ribosomal protein S4 | polymer | 206 | 23514.2 | 1 | UniProt (C3SR62) | Escherichia coli | |
| 38 | LA (e) | 30S ribosomal protein S5 | polymer | 167 | 17629.4 | 1 | UniProt (C3SR27) | Escherichia coli | |
| 39 | MA (f) | 30S ribosomal protein S6 | polymer | 135 | 15727.5 | 1 | UniProt (P02358) Pfam (PF01250) | Escherichia coli | Small ribosomal subunit protein bS6 |
| 40 | NA (g) | 30S ribosomal protein S7 | polymer | 179 | 20055.2 | 1 | UniProt (P02359) Pfam (PF00177) | Escherichia coli | Small ribosomal subunit protein uS7 |
| 41 | OA (h) | 30S ribosomal protein S8 | polymer | 130 | 14146.6 | 1 | UniProt (C3SR12) | Escherichia coli | |
| 42 | PA (i) | 30S ribosomal protein S9 | polymer | 130 | 14886.3 | 1 | UniProt (C3SRY2) | Escherichia coli | |
| 43 | QA (j) | 30S ribosomal protein S10 | polymer | 103 | 11755.6 | 1 | UniProt (C3SQT7) | Escherichia coli | |
| 44 | RA (k) | 30S ribosomal protein S11 | polymer | 129 | 13871.0 | 1 | UniProt (C3SR57) | Escherichia coli | |
| 45 | SA (l) | 30S ribosomal protein S12 | polymer | 124 | 13768.2 | 1 | UniProt (C3SQR7) | Escherichia coli | |
| 46 | TA (m) | 30S ribosomal protein S13 | polymer | 118 | 13128.5 | 1 | UniProt (C3SR52) | Escherichia coli | |
| 47 | UA (n) | 30S ribosomal protein S14 | polymer | 102 | 11677.6 | 1 | UniProt (C3SR07) | Escherichia coli | |
| 48 | VA (o) | 30S ribosomal protein S15 | polymer | 89 | 10290.8 | 1 | UniProt (C3SSQ7) | Escherichia coli | |
| 49 | WA (p) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (C3SYP2) | Escherichia coli | |
| 50 | XA (q) | 30S ribosomal protein S17 | polymer | 84 | 9724.5 | 1 | UniProt (C3SQY7) | Escherichia coli | |
| 51 | YA (r) | 30S ribosomal protein S18 | polymer | 75 | 9005.5 | 1 | UniProt (C3SFP7) | Escherichia coli | |
| 52 | ZA (s) | 30S ribosomal protein S19 | polymer | 92 | 10455.4 | 1 | UniProt (C3SQW2) | Escherichia coli | |
| 53 | AB (t) | 30S ribosomal protein S20 | polymer | 87 | 9708.5 | 1 | UniProt (C3TRH7) | Escherichia coli | |
| 54 | BB (u) | 30S ribosomal protein S21 | polymer | 71 | 8524.0 | 1 | UniProt (C3STZ7) | Escherichia coli | |
| 55 | CB (v) | P-site tRNA(fMet) | polymer | 77 | 24818.9 | 1 | GenBank (687670942) | Escherichia coli | |
| 56 | DB (w) | P-site fMet-Phe-tRNA(Phe) | polymer | 76 | 24643.9 | 1 | Escherichia coli | ||
| 57 | EB (y) | Dipeptide (FME-PHE) | polymer | 2 | 324.4 | 1 | Escherichia coli | ||
| 58 | FB (z) | mRNA | polymer | 33 | 10480.2 | 1 | Escherichia coli | ||
| 59 | AC, AD, AE, AF, AG... (A, a, 0, B, m...) | MAGNESIUM ION | non-polymer | 24.3 | 363 | Chemie (MG) PubChem (888) | |||
| 60 | HB, IB (4, 6) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 61 | ML, VK (B, A) | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) PubChem (923) | |||
| 62 | DP, WO, YO, ZO (a) | APRAMYCIN | non-polymer | 539.6 | 4 | Chemie (AM2) PubChem (16757849) PubChem (23305085) PubChem (44119923) PubChem (16395964) PubChem (44784762) PubChem (71428) PubChem (45105104) PubChem (23958199) PubChem (52949248) PubChem (57397142) PubChem (439519) PubChem (71306481) PubChem (71313473) PubChem (53393693) PubChem (73951969) PubChem (89903933) PubChem (3081545) PubChem (92328352) PubChem (92328354) PubChem (96358449) PubChem (96358446) PubChem (102565449) PubChem (6427043) PubChem (6604396) PubChem (122581310) PubChem (6713994) PubChem (124511479) PubChem (124717614) PubChem (124717616) PubChem (92328353) PubChem (92328355) PubChem (10098771) PubChem (96358443) PubChem (96358448) PubChem (6710735) PubChem (134693919) PubChem (118410308) PubChem (118410321) PubChem (134814278) PubChem (12898620) PubChem (137628585) PubChem (138107157) PubChem (124507110) PubChem (124511478) PubChem (124511480) PubChem (124717613) PubChem (124717615) PubChem (155802492) PubChem (162960550) PubChem (162960552) PubChem (164114074) PubChem (126541504) PubChem (126541519) PubChem (171317955) PubChem (126969597) PubChem (129715889) PubChem (131632422) PubChem (134780435) PubChem (134780436) PubChem (137706136) PubChem (140891139) PubChem (145998733) PubChem (162960551) PubChem (172433808) | |||
| 63 | NP, OP, PP (A, a, z) | water | water | 18.0 | 22 | Chemie (HOH) |
Sequence modifications
n: 0 - 101 (UniProt: C3SR07)
| PDB | External Database | Details |
|---|---|---|
| Ala 35 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 58 |
| Total formula weight | 2233010.5 | |
| Non-Polymers* | Number of molecules | 371 |
| Total formula weight | 11157.8 | |
| All* | Total formula weight | 2244168.3 |
