7PIW

Stacked stretched Dunaliella PSII

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, XB, YA, Z (A, a, A1, a1)	Photosystem II protein D1	polymer	336	37291.5	4	UniProt (D0FY08) Pfam (PF00124)	Dunaliella salina (Green alga Protococcus salinus)	PSII D1 protein,Photosystem II Q(B) protein
2	AA, B, YB, ZA (B, b, B1, b1)	Photosystem II CP47 reaction center protein	polymer	484	53289.5	4	UniProt (D0FY05) Pfam (PF00421)	Dunaliella salina (Green alga Protococcus salinus)	PSII 47 kDa protein,Protein CP-47
3	AB, BA, C, ZB (V, v, V1, v1)	Photosystem II reaction center protein Ycf12	polymer	32	3217.9	4	UniProt (D0FY13) Pfam (PF05969)	Dunaliella salina (Green alga Protococcus salinus)
4	AC, BB, CA, D (C, c, C1, c1)	Photosystem II CP43 reaction center protein	polymer	449	49129.0	4	UniProt (D0FXY3) Pfam (PF00421)	Dunaliella salina (Green alga Protococcus salinus)	PSII 43 kDa protein,Protein CP-43
5	BC, CB, DA, E (D, d, D1, d1)	Photosystem II D2 protein	polymer	348	38965.4	4	UniProt (D0FXW8) Pfam (PF00124)	Dunaliella salina (Green alga Protococcus salinus)	PSII D2 protein,Photosystem Q(A) protein
6	CC, DB, EA, F (E, e, E1, e1)	Cytochrome b559 subunit alpha	polymer	76	8743.8	4	UniProt (D0FY01) Pfam (PF00283) Pfam (PF00284)	Dunaliella salina (Green alga Protococcus salinus)	PSII reaction center subunit V
7	DC, EB, FA, G (F, f, F1, f1)	Cytochrome b559 subunit beta	polymer	31	3549.3	4	UniProt (D0FY18) Pfam (PF00283)	Dunaliella salina (Green alga Protococcus salinus)	PSII reaction center subunit VI
8	EC, FB, GA, H (H, h, H1, h1)	Photosystem II reaction center protein H	polymer	67	7124.4	4	UniProt (D0FY02) Pfam (PF00737)	Dunaliella salina (Green alga Protococcus salinus)	PSII-H
9	FC, GB, HA, I (I, i, I1, i1)	Photosystem II reaction center protein I	polymer	35	3929.6	4	UniProt (D0FXX5) Pfam (PF02532)	Dunaliella salina (Green alga Protococcus salinus)	PSII-I,PSII 4.8 kDa protein
10	GC, HB, IA, J (J, j, J1, j1)	Photosystem II reaction center protein J	polymer	36	3737.5	4	UniProt (D0FXW2) Pfam (PF01788)	Dunaliella salina (Green alga Protococcus salinus)	PSII-J
11	HC, IB, JA, K (K, k, K1, k1)	Photosystem II reaction center protein K	polymer	37	4160.0	4	UniProt (D0FXX2) Pfam (PF02533)	Dunaliella salina (Green alga Protococcus salinus)	PSII-K
12	JB, KA, L (L, l, L1)	Photosystem II reaction center protein L	polymer	38	4417.2	3	UniProt (D0FY19) Pfam (PF02419)	Dunaliella salina (Green alga Protococcus salinus)	PSII-L
13	LA, M (M, m)	Photosystem II reaction center protein M	polymer	32	3437.1	2	UniProt (D0FXZ3) Pfam (PF05151)	Dunaliella salina (Green alga Protococcus salinus)	PSII-M
14	JC, LB, MA, N (O, o, O1, o1)	PsbO	polymer	238	25874.9	4		Dunaliella salina
15	KC, MB, NA, O (P, p, P1, p1)	PsbP	polymer	187	20425.7	4		Dunaliella salina
16	LC, NB, OA, P (T, t, T1, t1)	Photosystem II reaction center protein T	polymer	30	3478.2	4	UniProt (D0FY04) Pfam (PF01405)	Dunaliella salina (Green alga Protococcus salinus)	PSII-T
17	MC, OB, PA, Q (W, w, W1, w1)	PsbW	polymer	44	4698.3	4		Dunaliella salina
18	NC, PB, QA, R (X, x, X1, x1)	PsbX	polymer	30	2854.4	4		Dunaliella salina
19	OC, QB, RA, S (Z, z, Z1, z1)	PsbZ	polymer	61	6430.6	4		Dunaliella salina
20	PC, RB, SA, T (N, n, N1, n1)	LHCII M3	polymer	222	24075.1	4		Dunaliella salina
21	QC, SB, TA, U (G, g, G1, g1)	LHCII M2	polymer	221	23719.5	4		Dunaliella salina
22	UA, V (R, r)	CP29	polymer	202	21748.5	2		Dunaliella salina
23	SC, UB, VA, W (S, s, S1, s1)	CP26	polymer	243	26233.6	4		Dunaliella salina
24	TC, VB, WA, X (Y, y, Y1, y1)	LHCII M1	polymer	222	23537.6	4		Dunaliella salina
25	UC, WB, XA, Y (U, u, U1, u1)	PsbU	polymer	27	3219.6	4		Dunaliella salina
26	IC, KB (M1, m1)	Photosystem II reaction center protein M	polymer	31	3308.0	2	UniProt (D0FXZ3) Pfam (PF05151)	Dunaliella salina (Green alga Protococcus salinus)	PSII-M
27	RC, TB (R1, r1)	CP29	polymer	202	21828.4	2		Dunaliella salina
28	AQ, JJ, VC, ZW (A1, a, A, a1)	CA-MN4-O5 CLUSTER	non-polymer		339.8	4	Chemie (OEX)
29	AX, BQ, KJ, WC (a1, A1, a, A)	FE (II) ION	non-polymer		55.8	4	Chemie (FE2)
30	BX, CQ, CX, DQ, LJ... (a1, A1, a, A)	CHLORIDE ION	non-polymer		35.5	8	Chemie (CL)
31	ABA, AD, AH, AJ, AK... (g1, A, G, Y, b...)	CHLOROPHYLL A	non-polymer		893.5	316	Chemie (CLA)
32	CD, DD, GX, HQ, HX... (A, a1, A1, a)	PHEOPHYTIN A	non-polymer		871.2	8	Chemie (PHO)
33	AE, AZ, BS, BZ, CS... (B, c1, C1, b1, A...)	BETA-CAROTENE	non-polymer		536.9	32	Chemie (BCR)
34	CAA, CE, EF, FT, GD... (m1, B, C, M1, A...)	1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL	non-polymer		795.1	16	Chemie (SQD)
35	AF, DE, DM, EAA, GM... (C, B, d, w1, h...)	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE	non-polymer		787.2	26	Chemie (LMG)
36	ID, NX, OQ, WJ (A, a1, A1, a)	SODIUM ION	non-polymer		23.0	4	Chemie (NA)
37	BE, GY, HR, PK (B, b1, B1, b)	(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol	non-polymer		568.9	4	Chemie (C7Z)
38	AAA, CF, CT, EE, JZ... (j1, C, J1, B, c1...)	DIACYL GLYCEROL	non-polymer		625.0	10	Chemie (DGA)
39	AT, FE, TK, UK, ZP (I1, B, b, y)	GLYCEROL	non-polymer		92.1	5	Chemie (GOL)
40	BF, EZ, FS, FZ, GS... (C, c1, C1, b1, B1...)	DIGALACTOSYL DIACYL GLYCEROL (DGDG)	non-polymer		949.3	16	Chemie (DGD)
41	AM, AU, AW, BM, CM... (d, N1, S1, n, s...)	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE	non-polymer		723.0	35	Chemie (LHG)
42	FF, MZ, NS, UL (C, c1, C1, c)	trimethyl-[(2~{R})-1-oxidanyl-1-oxidanylidene-4-[(2~{S})-2-[(1~{S})-1-oxidanyloctadecoxy]-3-[(1~{R})-1-oxidanyloctadecoxy]propoxy]butan-2-yl]azanium	non-polymer		773.2	4	Chemie (LMK)
43	GF, NZ, OS, VL (D, d1, D1, d)	BICARBONATE ION	non-polymer		61.0	4	Chemie (BCT)
44	KF, RZ, SS, ZL (D, d1, D1, d)	2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE	non-polymer		749.2	4	Chemie (PL9)
45	EM, PF, WZ, XS (f, F, f1, F1)	PROTOPORPHYRIN IX CONTAINING FE	non-polymer		616.5	4	Chemie (HEM)
46	FM, QF, XZ, YS (h, H, h1, H1)	(3R)-beta,beta-caroten-3-ol	non-polymer		552.9	4	Chemie (RRX)
47	ADA, AG, AI, BG, BI... (y1, N, S, G1, g1...)	CHLOROPHYLL B	non-polymer		907.5	92	Chemie (CHL)
48	ACA, AP, BH, CH, DJ... (r1, s, G, Y, R1...)	(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL	non-polymer		568.9	36	Chemie (LUT)
49	AN, BCA, DH, EV, FJ... (n, r1, G, R1, Y...)	(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL	non-polymer		600.9	16	Chemie (XAT)
50	BN, BP, CCA, EH, FV... (n, s, r1, G, R1...)	(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL	non-polymer		600.9	20	Chemie (NEX)
51	BW, DP, NI, YCA (S1, s, S, s1)	(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate	non-polymer		453.6	4	Chemie (LPX)
52	CW, DAA, EP, GT, HM... (S1, t1, s, T1, i...)	1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE	non-polymer		705.0	9	Chemie (3PH)
53	IJ, MX, NQ, TDA, WW... (Y, a1, A1, y1, Y1...)	SPHINGOSINE	non-polymer		299.5	6	Chemie (SPH)
54	BAA, BT, DT, ZZ (k1, I1, K1, i1)	Tripalmitoylglycerol	non-polymer		807.3	4	Chemie (4RF)
55	DCA, GV (r1, R1)	DODECYL-BETA-D-MALTOSIDE	non-polymer		510.6	2	Chemie (LMT)
56	ECA, HV (r1, R1)	ERGOSTEROL	non-polymer		396.6	2	Chemie (ERG)
57	UDA, VDA, XW, YW (y1, Y1)	PHOSPHATIDYLETHANOLAMINE	non-polymer		734.0	4	Chemie (PTY)

Sequence modifications

B, b, B1, b1: 2 - 485 (UniProt: D0FY05)

PDB	External Database	Details
Val 298	Leu 298	variant
Ser 415	Leu 415	variant

D, d, D1, d1: 5 - 352 (UniProt: D0FXW8)

PDB	External Database	Details
Ile 319	Leu 319	variant

H, h, H1, h1: 19 - 85 (UniProt: D0FY02)

PDB	External Database	Details
Ala 85	Ser 81	variant

J, j, J1, j1: 7 - 42 (UniProt: D0FXW2)

PDB	External Database	Details
Ile 7	Thr 7	variant
Ala 28	Gly 28	variant
Leu 42	Gln 42	variant

M, m: 2 - 33 (UniProt: D0FXZ3)

PDB	External Database	Details
Thr 9	Ile 9	variant

M1, m1: 3 - 33 (UniProt: D0FXZ3)

PDB	External Database	Details
Thr 9	Ile 9	variant

Contents of the asymmetric unit

Polymers	Number of chains	99
	Total formula weight	1624637.8
Non-Polymers*	Number of molecules	703
	Total formula weight	545662.6
All*	Total formula weight	2170300.4

*Water molecules are not included.