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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7PI5

Unstacked stretched Dunaliella PSII

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, Z
(A, a)		Photosystem II protein D1polymer33637291.52UniProt (D0FY08)
Pfam (PF00124)		Dunaliella salinaPSII D1 protein,Photosystem II Q(B) protein
2AA, B
(B, b)		Photosystem II CP47 reaction center proteinpolymer48453289.52UniProt (D0FY05)
Pfam (PF00421)		Dunaliella salinaPSII 47 kDa protein,Protein CP-47
3BA, C
(V, v)		Photosystem II reaction center protein Ycf12polymer323217.92UniProt (D0FY13)
Pfam (PF05969)		Dunaliella salina
4CA, D
(C, c)		Photosystem II CP43 reaction center proteinpolymer44949129.02UniProt (D0FXY3)
Pfam (PF00421)		Dunaliella salinaPSII 43 kDa protein,Protein CP-43
5DA, E
(D, d)		Photosystem II D2 proteinpolymer34838965.42UniProt (A0A1C8XRK9)
Pfam (PF00124)		Dunaliella salinaPSII D2 protein,Photosystem Q(A) protein
6EA, F
(E, e)		Cytochrome b559 subunit alphapolymer768743.82UniProt (D0FY01)
Pfam (PF00283)
Pfam (PF00284)		Dunaliella salinaPSII reaction center subunit V
7FA, G
(F, f)		Cytochrome b559 subunit betapolymer313549.32UniProt (A0A1C8XRP4)
Pfam (PF00283)		Dunaliella salinaPSII reaction center subunit VI
8GA, H
(H, h)		Photosystem II reaction center protein Hpolymer677124.42UniProt (A0A1C8XRP3)
Pfam (PF00737)		Dunaliella salinaPSII-H
9HA, I
(I, i)		Photosystem II reaction center protein Ipolymer353929.62UniProt (D0FXX5)
Pfam (PF02532)		Dunaliella salinaPSII-I,PSII 4.8 kDa protein
10IA, J
(J, j)		Photosystem II reaction center protein Jpolymer363737.52UniProt (A0A1C8XRM8)
Pfam (PF01788)		Dunaliella salinaPSII-J
11JA, K
(K, k)		Photosystem II reaction center protein Kpolymer374160.02UniProt (D0FXX2)
Pfam (PF02533)		Dunaliella salinaPSII-K
12KA, L
(L, l)		Photosystem II reaction center protein Lpolymer384417.22UniProt (D0FY19)
Pfam (PF02419)		Dunaliella salinaPSII-L
13LA, M
(M, m)		Photosystem II reaction center protein Mpolymer323437.12UniProt (D0FXZ3)
Pfam (PF05151)		Dunaliella salinaPSII-M
14MA, N
(O, o)		PsbOpolymer23825874.92Dunaliella salina
15NA, O
(P, p)		PsbPpolymer18720425.72Dunaliella salina
16OA, P
(T, t)		Photosystem II reaction center protein Tpolymer303478.22UniProt (D0FY04)
Pfam (PF01405)		Dunaliella salinaPSII-T
17PA, Q
(W, w)		PSII 6.1 kDa proteinpolymer444698.32UniProt (A0A7S3QU88)
Pfam (PF07123)		Dunaliella salina
18QA, R
(X, x)		Hypothetical proteinpolymer302854.42UniProt (A0A7S3VKF3)
Pfam (PF06596)		Dunaliella salina
19RA, S
(Z, z)		Photosystem II reaction center protein Zpolymer616430.62UniProt (D0FXZ2)
Pfam (PF01737)		Dunaliella salinaPSII-Z
20SA, T
(N, n)		LHCII M3polymer22224075.12Dunaliella salina
21TA, U
(G, g)		Chlorophyll a-b binding protein, chloroplasticpolymer22123719.52UniProt (A1XKU7)
Pfam (PF00504)		Dunaliella salina
22UA, V
(R, r)		CP29polymer20221748.52Dunaliella salina
23VA, W
(S, s)		CP26polymer24326233.62UniProt (A0A7S3VRZ8)
Pfam (PF00504)		Dunaliella salina
24WA, X
(Y, y)		LHCII M1polymer22223537.62UniProt (A0A6S8N9J6)
Pfam (PF00504)		Dunaliella salina
25XA, Y
(U, u)		PsbUpolymer273219.62Dunaliella salina
26MH, YA
(a, A)		CA-MN4-O5 CLUSTERnon-polymer339.82Chemie (OEX)
27NH, ZA
(a, A)		FE (II) IONnon-polymer55.82Chemie (FE2)
28AB, BB, OH, PH
(A, a)		CHLORIDE IONnon-polymer35.54Chemie (CL)
29AC, AE, AF, AG, AI...
(B, N, G, S, b...)		CHLOROPHYLL Anon-polymer893.5160Chemie (CLA)
30FB, GB, TH, UH
(A, a)		PHEOPHYTIN Anon-polymer871.24Chemie (PHO)
31BK, CC, DC, IB, LJ...
(d, B, A, c, D...)		BETA-CAROTENEnon-polymer536.916Chemie (BCR)
32FC, HD, JB, TI, WJ...
(B, C, A, b, c...)		1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLnon-polymer795.16Chemie (SQD)
33DD, GC, GK, JK, KB...
(C, B, d, h, A...)		1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDEnon-polymer787.212Chemie (LMG)
34LB, ZH
(A, a)		SODIUM IONnon-polymer23.02Chemie (NA)
35EC, SI
(B, b)		(1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-olnon-polymer568.92Chemie (C7Z)
36FD, HC, UJ, VI
(C, B, c, b)		DIACYL GLYCEROLnon-polymer625.04Chemie (DGA)
37CO, IC, WI, XI
(y, B, b)		GLYCEROLnon-polymer92.14Chemie (GOL)
38AD, BD, CD, ED, PJ...
(C, c)		DIGALACTOSYL DIACYL GLYCEROL (DGDG)non-polymer949.38Chemie (DGD)
39AO, DK, EK, FK, FL...
(y, d, n, s, C...)		1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLEnon-polymer723.018Chemie (LHG)
40ID, XJ
(C, c)		trimethyl-[(2~{R})-1-oxidanyl-1-oxidanylidene-4-[(2~{S})-2-[(1~{S})-1-oxidanyloctadecoxy]-3-[(1~{R})-1-oxidanyloctadecoxy]propoxy]butan-2-yl]azaniumnon-polymer773.22Chemie (LMK)
41JD, YJ
(D, d)		BICARBONATE IONnon-polymer61.02Chemie (BCT)
42CK, ND
(d, D)		2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONEnon-polymer749.22Chemie (PL9)
43HK, SD
(f, F)		PROTOPORPHYRIN IX CONTAINING FEnon-polymer616.52Chemie (HEM)
44IK, TD
(h, H)		(3R)-beta,beta-caroten-3-olnon-polymer552.92Chemie (RRX)
45AH, BE, CE, CG, DE...
(Y, N, S, r, g...)		CHLOROPHYLL Bnon-polymer907.546Chemie (CHL)
46BL, CL, CN, DN, EF...
(n, s, G, Y, N...)		(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOLnon-polymer568.918Chemie (LUT)
47AM, DL, GF, IH, NE...
(r, n, G, Y, N...)		(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOLnon-polymer600.98Chemie (XAT)
48BM, EL, EN, HF, JH...
(r, n, s, G, Y...)		(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOLnon-polymer600.910Chemie (NEX)
49GN, QG
(s, S)		(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoatenon-polymer453.62Chemie (LPX)
50HN, KK, RG
(s, i, S)		1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATEnon-polymer705.03Chemie (3PH)
51BO, LH
(y, Y)		SPHINGOSINEnon-polymer299.52Chemie (SPH)
52AP, BP, CP, DO, DP...
(a, b, v, A, c...)		waterwater18.0718Chemie (HOH)
Sequence modifications
B, b: 2 - 485 (UniProt: D0FY05)
PDBExternal DatabaseDetails
Val 298Leu 298variant
Ser 415Leu 415variant
J, j: 7 - 42 (UniProt: A0A1C8XRM8)
PDBExternal DatabaseDetails
Ile 7Thr 7conflict
Leu 42Gln 42conflict
M, m: 2 - 33 (UniProt: D0FXZ3)
PDBExternal DatabaseDetails
Thr 9Ile 9variant
W, w: 60 - 103 (UniProt: A0A7S3QU88)
PDBExternal DatabaseDetails
Met 65Leu 70conflict
Tyr 96Phe 101conflict
X, x: 64 - 93 (UniProt: A0A7S3VKF3)
PDBExternal DatabaseDetails
Val 81Thr 120conflict
G, g: 31 - 251 (UniProt: A1XKU7)
PDBExternal DatabaseDetails
Ala 180Pro 181conflict
S, s: 47 - 289 (UniProt: A0A7S3VRZ8)
PDBExternal DatabaseDetails
Asp 56Glu 52conflict
Ile 119Leu 115conflict
Lys 209Gln 205conflict
Ile 244Val 240conflict
Ala 245Gly 241conflict
Ile 264Phe 260conflict
Leu 268Ile 264conflict
Y, y: 39 - 260 (UniProt: A0A6S8N9J6)
PDBExternal DatabaseDetails
Phe 49Tyr 61conflict
Ser 52Ala 64conflict
Thr 73Ser 85conflict
Thr 81Asn 93conflict
Ile 123Val 135conflict
Leu 220Phe 232conflict
Gln 235Thr 247conflict
Thr 259Ser 271conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains50
Total formula weight814576.6
Non-Polymers*Number of molecules343
Total formula weight266768.5
All*Total formula weight1081345.2
*Water molecules are not included.

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PDB entries from 2024-10-30

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