7PI0
Unstacked compact Dunaliella PSII
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, a | Photosystem II protein D1 | polymer | 336 | 37291.5 | 2 | UniProt (D0FY08) Pfam (PF00124) In PDB | Dunaliella salina | PSII D1 protein,Photosystem II Q(B) protein |
2 | B, b | Photosystem II CP47 reaction center protein | polymer | 484 | 53321.5 | 2 | UniProt (A0A1C8XRM6) Pfam (PF00421) In PDB | Dunaliella salina | PSII 47 kDa protein,Protein CP-47 |
3 | V, v | Photosystem II reaction center protein Ycf12 | polymer | 32 | 3217.9 | 2 | UniProt (D0FY13) Pfam (PF05969) In PDB | Dunaliella salina | |
4 | C, c | Photosystem II CP43 reaction center protein | polymer | 449 | 49129.0 | 2 | UniProt (D0FXY3) Pfam (PF00421) In PDB | Dunaliella salina | PSII 43 kDa protein,Protein CP-43 |
5 | D, d | Photosystem II D2 protein | polymer | 348 | 38965.4 | 2 | UniProt (A0A1C8XRK9) Pfam (PF00124) In PDB | Dunaliella salina | PSII D2 protein,Photosystem Q(A) protein |
6 | E, e | Cytochrome b559 subunit alpha | polymer | 76 | 8743.8 | 2 | UniProt (D0FY01) Pfam (PF00283) Pfam (PF00284) In PDB | Dunaliella salina | PSII reaction center subunit V |
7 | F, f | Cytochrome b559 subunit beta | polymer | 31 | 3549.3 | 2 | UniProt (A0A1C8XRP4) Pfam (PF00283) UniProt (by SIFTS) (D0FY18) In PDB | Dunaliella salina | PSII reaction center subunit VI |
8 | H, h | Photosystem II reaction center protein H | polymer | 67 | 7124.4 | 2 | UniProt (A0A1C8XRP3) Pfam (PF00737) In PDB | Dunaliella salina | PSII-H |
9 | I, i | Photosystem II reaction center protein I | polymer | 35 | 3929.6 | 2 | UniProt (D0FXX5) Pfam (PF02532) In PDB | Dunaliella salina | PSII-I,PSII 4.8 kDa protein |
10 | J, j | Photosystem II reaction center protein J | polymer | 36 | 3737.5 | 2 | UniProt (A0A1C8XRM8) Pfam (PF01788) In PDB | Dunaliella salina | PSII-J |
11 | K, k | Photosystem II reaction center protein K | polymer | 37 | 4160.0 | 2 | UniProt (D0FXX2) Pfam (PF02533) In PDB | Dunaliella salina | PSII-K |
12 | L, l | Photosystem II reaction center protein L | polymer | 38 | 4417.2 | 2 | UniProt (D0FY19) Pfam (PF02419) In PDB | Dunaliella salina | PSII-L |
13 | M, m | PsbM | polymer | 31 | 3308.0 | 2 | Pfam (PF05151) UniProt (by SIFTS) (D0FXZ3) In PDB | Dunaliella salina | |
14 | O, o | PsbO | polymer | 238 | 25874.9 | 2 | Dunaliella salina | ||
15 | P, p | PsbP | polymer | 187 | 20425.7 | 2 | Dunaliella salina | ||
16 | T, t | Photosystem II reaction center protein T | polymer | 30 | 3478.2 | 2 | UniProt (D0FY04) Pfam (PF01405) In PDB | Dunaliella salina | PSII-T |
17 | W, w | PsbW | polymer | 44 | 4698.3 | 2 | Dunaliella salina | ||
18 | X, x | PsbX | polymer | 30 | 2854.4 | 2 | Dunaliella salina | ||
19 | Z, z | Photosystem II reaction center protein Z | polymer | 61 | 6430.6 | 2 | UniProt (D0FXZ2) Pfam (PF01737) In PDB | Dunaliella salina | PSII-Z |
20 | N, n | LHCII M3 | polymer | 222 | 24075.1 | 2 | Dunaliella salina | ||
21 | G, g | Chlorophyll a-b binding protein, chloroplastic | polymer | 221 | 23719.5 | 2 | UniProt (A1XKU7) Pfam (PF00504) In PDB | Dunaliella salina | |
22 | R, r | CP29 | polymer | 196 | 21163.7 | 2 | Dunaliella salina | ||
23 | S, s | CP26 | polymer | 243 | 26233.6 | 2 | Pfam (PF00504) UniProt (by SIFTS) (G4WUW1) In PDB | Dunaliella salina | |
24 | Y, y | LHCII M1 | polymer | 222 | 23537.6 | 2 | Pfam (PF00504) UniProt (by SIFTS) (A8BDJ0) In PDB | Dunaliella salina | |
25 | U, u | PsbU | polymer | 27 | 3219.6 | 2 | Dunaliella salina | ||
26 | a, A | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
27 | a, A | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) | |||
28 | A, a | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) | |||
29 | B, G, a, n, s... | CHLOROPHYLL A | non-polymer | 893.5 | 156 | Chemie (CLA) | |||
30 | A, a | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
31 | C, b, a, B, c... | BETA-CAROTENE | non-polymer | 536.9 | 16 | Chemie (BCR) | |||
32 | a, A | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) | |||
33 | M, a, c, b, C... | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 10 | Chemie (SQD) | |||
34 | a, A, y, Y | SPHINGOSINE | non-polymer | 299.5 | 4 | Chemie (SPH) | |||
35 | c, W, b, C, B... | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 15 | Chemie (LMG) | |||
36 | b, B | (1~{S})-3,5,5-trimethyl-4-[(1~{E},3~{E},5~{E},7~{E},9~{E},11~{E},13~{E},15~{E},17~{E})-3,7,12,16-tetramethyl-18-[(4~{S})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenyl]cyclohex-3-en-1-ol | non-polymer | 568.9 | 2 | Chemie (C7Z) | |||
37 | C, b, B, c | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 8 | Chemie (DGD) | |||
38 | T, b, B, s, S... | 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE | non-polymer | 705.0 | 6 | Chemie (3PH) | |||
39 | b, c, B, C, j... | DIACYL GLYCEROL | non-polymer | 625.0 | 6 | Chemie (DGA) | |||
40 | c, d, g, C, y... | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 19 | Chemie (LHG) | |||
41 | d, D | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) | |||
42 | d, D | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 2 | Chemie (PL9) | |||
43 | f, F | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 2 | Chemie (HEM) | |||
44 | h, H | (3R)-beta,beta-caroten-3-ol | non-polymer | 552.9 | 2 | Chemie (RRX) | |||
45 | Y, g, y, G, S... | CHLOROPHYLL B | non-polymer | 907.5 | 46 | Chemie (CHL) | |||
46 | g, y, G, n, s... | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 18 | Chemie (LUT) | |||
47 | R, g, y, G, n... | (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL | non-polymer | 600.9 | 10 | Chemie (NEX) | |||
48 | R, n, g, y, N... | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 8 | Chemie (XAT) | |||
49 | r, R | DODECYL-BETA-D-MALTOSIDE | non-polymer | 510.6 | 2 | Chemie (LMT) | |||
50 | s, S | (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate | non-polymer | 453.6 | 2 | Chemie (LPX) | |||
51 | y, Y | PHOSPHATIDYLETHANOLAMINE | non-polymer | 734.0 | 4 | Chemie (PTY) | |||
52 | water | water | 18.0 | 1724 | Chemie (HOH) |
Sequence modifications
J, j: 7 - 42 (UniProt: A0A1C8XRM8)
G, g: 31 - 251 (UniProt: A1XKU7)
PDB | External Database | Details |
---|---|---|
Ile 7 | Thr 7 | conflict |
Leu 42 | Gln 42 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 180 | Pro 181 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 50 |
Total formula weight | 813212.8 | |
Non-Polymers* | Number of molecules | 354 |
Total formula weight | 275466.0 | |
All* | Total formula weight | 1088678.9 |