7PE7
cryo-EM structure of DEPTOR bound to human mTOR complex 2, overall refinement
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | B, A | Serine/threonine-protein kinase mTOR | polymer | 2571 | 291321.9 | 2 | UniProt (P42345) Pfam (PF11865) Pfam (PF02259) Pfam (PF08771) Pfam (PF00454) Pfam (PF02260) In PDB | Homo sapiens (Human) | FK506-binding protein 12-rapamycin complex-associated protein 1,FKBP12-rapamycin complex-associated protein,Mammalian target of rapamycin,mTOR,Mechanistic target of rapamycin,Rapamycin and FKBP12 target 1,Rapamycin target protein 1 |
| 2 | D, C | Target of rapamycin complex subunit LST8 | polymer | 326 | 35910.1 | 2 | UniProt (Q9BVC4) Pfam (PF00400) In PDB | Homo sapiens (Human) | TORC subunit LST8,G protein beta subunit-like,Protein GbetaL,Mammalian lethal with SEC13 protein 8,mLST8 |
| 3 | F, E | Rapamycin-insensitive companion of mTOR | polymer | 1708 | 192472.9 | 2 | UniProt (Q6R327) Pfam (PF14664) Pfam (PF14666) Pfam (PF14663) Pfam (PF14668) Pfam (PF14665) In PDB | Homo sapiens (Human) | AVO3 homolog,hAVO3 |
| 4 | H, G | Target of rapamycin complex 2 subunit MAPKAP1 | polymer | 522 | 59206.7 | 2 | UniProt (Q9BPZ7) Pfam (PF05422) Pfam (PF16978) Pfam (PF16979) In PDB | Homo sapiens (Human) | TORC2 subunit MAPKAP1,Mitogen-activated protein kinase 2-associated protein 1,Stress-activated map kinase-interacting protein 1,mSIN1 |
| 5 | I, J | DEP domain-containing mTOR-interacting protein | polymer | 409 | 46365.8 | 2 | UniProt (Q8TB45) Pfam (PF00610) In PDB | Homo sapiens (Human) | DEP domain-containing protein 6 |
| 6 | B, A | INOSITOL HEXAKISPHOSPHATE | non-polymer | 660.0 | 2 | Chemie (IHP) | |||
| 7 | F, E | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 8 | H, G | ACETYL GROUP | non-polymer | 44.1 | 2 | Chemie (ACE) |
Sequence modifications
B, A: 1 - 2549 (UniProt: P42345)
I, J: 1 - 409 (UniProt: Q8TB45)
| PDB | External Database | Details |
|---|---|---|
| Gly 246 | - | insertion |
| Ser 246 | - | insertion |
| Thr 246 | - | insertion |
| Ser 246 | - | insertion |
| Gly 246 | - | insertion |
| Ser 246 | - | insertion |
| Gly 246 | - | insertion |
| Asp 246 | - | insertion |
| Tyr 246 | - | insertion |
| Lys 246 | - | insertion |
| Asp 246 | - | insertion |
| Asp 246 | - | insertion |
| Asp 246 | - | insertion |
| Asp 246 | - | insertion |
| Lys 247 | - | insertion |
| Gly 247 | - | insertion |
| Ser 247 | - | insertion |
| Thr 247 | - | insertion |
| Ser 247 | - | insertion |
| Gly 247 | - | insertion |
| Ser 247 | - | insertion |
| Gly 247 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Ser 204 | Asn 204 | variant |
| Asn 389 | Ser 389 | variant |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 1250555.0 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 1539.0 | |
| All* | Total formula weight | 1252094.0 |
