7PDY
A viral peptide from Marek's disease virus bound to chicken MHC-II molecule
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C, E (A, C, E) | MHC class II alpha chain | polymer | 191 | 21970.5 | 3 | UniProt (Q4U5Z6) Pfam (PF00993) Pfam (PF07654) | Gallus gallus (chicken) | MHC class II antigen alpha,MHC class II antigen alpha chain |
| 2 | B, D, F (B, D, F) | 38 kDa phosphoprotein,MHC class II beta chain | polymer | 225 | 25162.0 | 3 | UniProt (P68348) UniProt (Q4U5Z9) Pfam (PF00969) Pfam (PF07654) | Marek's disease herpesvirus (strain MD11/75C/R2) | Phosphoprotein pp38 |
| 3 | G (G) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 4 | H, Q, U, X (A, C, D, F) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NAG) | |||
| 5 | I, K, M, T, W (A, B, C, E) | GLYCEROL | non-polymer | 92.1 | 5 | Chemie (GOL) | |||
| 6 | J, N, P, R, S... (A, B, C, D, F) | ACETATE ION | non-polymer | 59.0 | 7 | Chemie (ACT) | |||
| 7 | L, O (A, B) | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 2 | Chemie (PEG) | |||
| 8 | AA, BA, CA, DA, EA... (B, C, D, E, F...) | water | water | 18.0 | 147 | Chemie (HOH) |
Sequence modifications
A, C, E: 5 - 192 (UniProt: Q4U5Z6)
B, D, F: -26 - -12 (UniProt: P68348)
B, D, F: 6 - 197 (UniProt: Q4U5Z9)
| PDB | External Database | Details |
|---|---|---|
| Asp 2 | - | expression tag |
| Arg 3 | - | expression tag |
| Arg 4 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Asp -29 | - | expression tag |
| Arg -28 | - | expression tag |
| Pro -27 | - | expression tag |
| Gly -9 | - | linker |
| Gly -8 | - | linker |
| Gly -7 | - | linker |
| Gly -6 | - | linker |
| Ser -5 | - | linker |
| Gly -4 | - | linker |
| Gly -3 | - | linker |
| Gly -2 | - | linker |
| Gly -1 | - | linker |
| Ser 0 | - | linker |
| Gly 1 | - | linker |
| Gly 2 | - | linker |
| Gly 3 | - | linker |
| Gly 4 | - | linker |
| Ser 5 | - | linker |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 141397.5 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 424.4 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 1970.8 | |
| All* | Total formula weight | 143792.8 |
