7P1F
Structure of KDNase from Aspergillus terrerus in complex with 2,3-didehydro-2,3-dideoxy-D-glycero-D-galacto-nonulosonic acid.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | B, A | Sialidase domain-containing protein | polymer | 410 | 44602.0 | 2 | UniProt (Q0CMX0) Pfam (PF13088) In PDB | Aspergillus terreus (strain NIH 2624 / FGSC A1156) | |
2 | B, A | 2,6-anhydro-3-deoxy-D-glycero-D-galacto-non-2-enonic acid | non-polymer | 250.2 | 2 | Chemie (KFN) | |||
3 | B, A | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
4 | B, A | CALCIUM ION | non-polymer | 40.1 | 2 | Chemie (CA) | |||
5 | water | water | 18.0 | 872 | Chemie (HOH) |
Sequence modifications
B, A: 17 - 403 (UniProt: Q0CMX0)
PDB | External Database | Details |
---|---|---|
Met -6 | - | initiating methionine |
Gly -5 | - | expression tag |
Ser -4 | - | expression tag |
Ser -3 | - | expression tag |
His -2 | - | expression tag |
His -1 | - | expression tag |
His 0 | - | expression tag |
His 1 | - | expression tag |
His 2 | - | expression tag |
His 3 | - | expression tag |
Ser 4 | - | expression tag |
Ser 5 | - | expression tag |
Gly 6 | - | expression tag |
Leu 7 | - | expression tag |
Val 8 | - | expression tag |
Pro 9 | - | expression tag |
Arg 10 | - | expression tag |
Gly 11 | - | expression tag |
Ser 12 | - | expression tag |
His 13 | - | expression tag |
Met 14 | - | expression tag |
Ala 15 | - | expression tag |
Ser 16 | - | expression tag |
Snn 128 | Asp 128 | modified residue |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 89204.1 | |
Non-Polymers* | Number of molecules | 8 |
Total formula weight | 948.9 | |
All* | Total formula weight | 90153.0 |